Showing : annotate • reset
0
votes
18
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3.8k
views
Genbank to Unigene IDs
annotate AnnBuilder annotate AnnBuilder
updated 20.1 years ago by ▴ 10 • written 20.1 years ago by 50k
0
votes
8
replies
1.7k
views
oligo on R 2.4.1?
GO Survival annotate genefilter affy affydata matchprobes affyQCReport affyio oligo GO
updated 17.3 years ago by ★ 7.4k • written 17.3 years ago by ★ 2.2k
0
votes
8
replies
2.0k
views
AnnBuilder and Kegg
Pathways GO Survival Cancer Organism annotate affydata vsn AnnBuilder globaltest GO vsn
updated 17.5 years ago by ▴ 190 • written 17.5 years ago by ★ 2.9k
0
votes
10
replies
1.8k
views
AnnBuilder doesn't work on gene information ("GENENAME", "SYMBOL", etc)
Microarray Annotation probe annotate affy AnnBuilder Microarray Annotation probe annotate
updated 17.9 years ago by ★ 2.9k • written 17.9 years ago by ★ 1.6k
0
votes
6
replies
1.5k
views
Many missing GO terms from GOHyperG call using mgu74av2
GO Survival hgu95av2 mgu74av2 Ruuid annotate multtest affy graph annaffy RBGL GOstats
updated 18.9 years ago by ★ 7.4k • written 18.9 years ago by ★ 1.4k
1
vote
8
replies
3.7k
views
GRanges apply functions
GO annotate GO annotate
updated 9.9 years ago by ★ 4.2k • written 9.9 years ago by ▴ 380
0
votes
7
replies
1.8k
views
annaffy annotation problem (hgu133plus2)
Annotation hgu133plus2 probe annotate AnnBuilder Annotation hgu133plus2 probe annotate
updated 19.2 years ago by ▴ 170 • written 19.2 years ago by ▴ 430
0
votes
4
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1.1k
views
Recent changes to Bioconductor packages
Normalization hgu95a hgu95av2 annotate reposTools limma Normalization hgu95a hgu95av2
21.1 years ago • updated 21.0 years ago madman@jimmy.harvard.edu ▴ 850
0
votes
3
replies
1.5k
views
AnnBuilder/ABPkgBuilder: lots of Errors
Annotation GO Cancer Organism Biobase annotate AnnBuilder PROcess bridge Annotation GO
updated 19.7 years ago by ★ 2.9k • written 19.7 years ago by ▴ 90
0
votes
3
replies
1.1k
views
Envir. drosgenome1, GENENAME not defined?
GO drosgenome1 cdf annotate affy GO drosgenome1 cdf annotate affy
updated 18.2 years ago by ▴ 780 • written 18.2 years ago by ▴ 270
0
votes
6
replies
1.6k
views
ANN: Bioconductor Release 1.7 is available
aCGH Microarray Annotation Classification annotate edd hexbin SAGElyzer Rgraphviz RMAGEML
updated 18.6 years ago by ▴ 190 • written 18.6 years ago by ★ 7.4k
0
votes
5
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2.6k
views
Issues about how to filter and annotate the MoGene-2_0-st and MoEx-1_0-st-v1 array probe sets
Annotation probe annotate annaffy oligo ReportingTools Annotation probe annotate annaffy
updated 9.9 years ago by ▴ 160 • written 10.0 years ago by 66k
0
votes
5
replies
1.1k
views
Recent changes to Bioconductor packages
SAGE annotate geneplotter graph SAGElyzer Rdbi SAGE annotate geneplotter graph SAGElyzer
21.3 years ago madman@jimmy.harvard.edu ▴ 850
0
votes
4
replies
982
views
(no subject)
annotate reposTools annotate reposTools
updated 21.3 years ago by ★ 3.9k • written 21.3 years ago by ▴ 60
0
votes
7
replies
1.8k
views
AnnBuilder questions...
Annotation annotate AnnBuilder Annotation annotate AnnBuilder
19.2 years ago Dipl.-Ing. Johannes Rainer ▴ 430
0
votes
3
replies
1.3k
views
Need assistance with the file preparation for ChIPpeakAnno. (Jennifer Yang from University of California, Santa Barbara)
Annotation annotate ChIPpeakAnno Annotation annotate ChIPpeakAnno
13.4 years ago Julie Zhu ★ 4.3k
0
votes
3
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1.8k
views
Use ChIPpeakAnno to find two-sided nearest genes to a peak
AnnotationData annotate ChIPpeakAnno AnnotationData annotate ChIPpeakAnno
11.5 years ago Julie Zhu ★ 4.3k
0
votes
3
replies
1.0k
views
Missing function locuslinkQuery and locuslinkBYID in annotate 1.18.0
GO hgu95av2 Biobase annotate GO hgu95av2 Biobase annotate
updated 15.6 years ago by ★ 7.2k • written 15.6 years ago by ▴ 300
0
votes
5
replies
1.7k
views
oligo package
Microarray Annotation annotate PROcess Microarray Annotation annotate PROcess
updated 11.5 years ago by 66k • written 11.5 years ago by ★ 13k
0
votes
7
replies
1.7k
views
Fwd: GO terms: Annotation for HumanMethylation450
Annotation Pathways GO probe annotate Annotation Pathways GO probe annotate
11.2 years ago Jinyan Huang ▴ 110
0
votes
4
replies
1.7k
views
[R-SIG-Mac] Mac os x graphviz-Rgraphviz problem
Biobase annotate geneplotter graph Rgraphviz BUS Biobase annotate geneplotter graph BUS
updated 17.3 years ago by ★ 7.4k • written 17.3 years ago by ★ 6.5k
0
votes
7
replies
1.7k
views
problem with GOstats, developmental version?
GO Survival hgu95av2 annotate affy affydata graph Rgraphviz limma gcrma matchprobes GO
updated 16.7 years ago by ★ 7.4k • written 16.7 years ago by ★ 2.2k
0
votes
4
replies
1.2k
views
makePDpackage
probe annotate probe annotate
updated 14.3 years ago by ★ 4.3k • written 14.3 years ago by ▴ 380
0
votes
5
replies
1.6k
views
error coercing an exprSet to ExpressionSet
GO cdf Biobase annotate multtest affy limma RBGL GOstats Category affycoretools GO cdf
updated 17.5 years ago by ★ 7.4k • written 17.5 years ago by ▴ 890
0
votes
4
replies
1.4k
views
Error while using AnnBuilder
Annotation GO Organism annotate AnnBuilder Annotation GO Organism annotate AnnBuilder
updated 18.3 years ago by ★ 7.4k • written 18.3 years ago by ▴ 160
0
votes
5
replies
1.6k
views
getBioC v1.2.22 & [R] v1.6.2
annotate edd genefilter geneplotter rhdf5 multtest ROC tkWidgets reposTools affy vsn
updated 21.2 years ago by ★ 3.9k • written 21.2 years ago by ▴ 70
0
votes
4
replies
1.1k
views
ABPkgBuilder Error; Again: Solved
Annotation GO Cancer Organism Biobase annotate AnnBuilder PROcess Annotation GO Cancer
updated 18.8 years ago by ★ 7.4k • written 18.8 years ago by ▴ 250
0
votes
4
replies
1.2k
views
problems with Affy vignette and affybatch objects
GO Survival cdf Biobase annotate genefilter multtest reposTools affy affydata graph GO
updated 17.6 years ago by 25k • written 17.6 years ago by ★ 2.2k
0
votes
4
replies
1.3k
views
error in function reduce from girafe
Annotation annotate biomaRt IRanges girafe Annotation annotate biomaRt IRanges girafe
updated 13.9 years ago by ▴ 450 • written 13.9 years ago by ▴ 810
0
votes
5
replies
1.7k
views
Importing CDF file for custom array using makecdfenv
Microarray GO Survival Cancer cdf Biobase annotate genefilter affy graph makecdfenv GO
updated 17.6 years ago by ▴ 20 • written 17.6 years ago by ★ 2.2k
0
votes
8
replies
1.8k
views
mouse SNPs
SNP Annotation GO HapMap annotate SNP Annotation GO HapMap annotate
13.7 years ago Glazko, Galina ▴ 350
0
votes
4
replies
2.2k
views
smoothScatter axis limits
annotate geneplotter annotate geneplotter
updated 17.0 years ago by ★ 1.9k • written 17.0 years ago by ▴ 250
0
votes
5
replies
1.4k
views
Manufacturer ids in lumiHumanV1
Annotation lumiHumanV1 annotate lumi Annotation lumiHumanV1 annotate lumi
updated 16.9 years ago by ★ 1.2k • written 16.9 years ago by ▴ 830
0
votes
2
replies
5.1k
views
Packages not getting installed
Microarray GO annotate Microarray GO annotate
updated 15.1 years ago by 66k • written 15.1 years ago by ▴ 90
0
votes
2
replies
1.7k
views
"AveExp" column has dissappeared from limma topTable
GO Survival annotate geneplotter affydata limma annaffy affyPLM GO Survival annotate
updated 17.2 years ago by 50k • written 17.2 years ago by ▴ 680
0
votes
3
replies
1.3k
views
GO terms not found in goTools and GO
GO Biobase annotate goTools biomaRt GO Biobase annotate goTools biomaRt
updated 16.9 years ago by ★ 7.4k • written 16.9 years ago by ▴ 80
0
votes
4
replies
1.0k
views
missing AnnBuilder parser
Annotation Organism annotate AnnBuilder Annotation Organism annotate AnnBuilder
updated 19.1 years ago by ★ 2.9k • written 19.2 years ago by ★ 1.3k
0
votes
3
replies
1.5k
views
Help with annotation packages
Microarray Annotation GO Anopheles gambiae probe annotate limma AnnBuilder biomaRt GO
updated 18.2 years ago by ▴ 420 • written 18.2 years ago by ▴ 460
0
votes
2
replies
1.1k
views
2fold sigchanges from limma
GO Survival hgu133a2 annotate hexbin limma gcrma matchprobes annaffy GO Survival hexbin
updated 17.5 years ago by 50k • written 17.5 years ago by ▴ 60
0
votes
4
replies
2.1k
views
disagreement between biomaRt and topGO
GO hgu133plus2 annotate geneplotter graph Rgraphviz PROcess goTools biomaRt Category GO
updated 16.7 years ago by ▴ 500 • written 16.7 years ago by ★ 1.4k
0
votes
3
replies
1.3k
views
GOstats hyperGTest question
Biobase annotate genefilter multtest graph Biobase annotate genefilter multtest graph
updated 17.4 years ago by ★ 7.4k • written 17.4 years ago by ▴ 80
0
votes
2
replies
1.2k
views
AnnBuilder problem
Organism annotate AnnBuilder Organism annotate AnnBuilder
updated 16.8 years ago by 25k • written 16.8 years ago by ▴ 130
0
votes
2
replies
1.0k
views
Annotate package
Microarray annotate Microarray annotate
updated 19.4 years ago by ★ 5.5k • written 19.4 years ago by ▴ 130
0
votes
2
replies
1.8k
views
Bioconductor Digest, Vol 138, Issue 27
annotate biovizBase ggbio UniProt.ws Pbase annotate biovizBase ggbio UniProt.ws Pbase
updated 9.8 years ago by ▴ 490 • written 9.8 years ago by 1.6k
0
votes
2
replies
699
views
Error using ABPkgBuilder?
Microarray annotate Microarray annotate
17.8 years ago Simon, Reinhard CIP ▴ 50
0
votes
2
replies
920
views
yeastCC installs ok, but won't load; R2.0.1
Biobase annotate Biobase annotate
19.3 years ago JDCGo@aol.com ▴ 30
0
votes
2
replies
1.5k
views
problem loading affycoretools
Survival hgu95av2 Biobase Ruuid annotate genefilter multtest affydata graph limma gcrma
17.8 years ago Jenny Drnevich ★ 2.2k
0
votes
2
replies
1.4k
views
problem with latest version of graph
GO annotate genefilter multtest affy graph Rgraphviz RBGL GOstats affyio affycoretools
18.0 years ago Kimpel, Mark W ▴ 890
0
votes
2
replies
907
views
error in installing Bioconductor development packages
Biobase annotate genefilter reposTools affy Biobase annotate genefilter reposTools affy
updated 19.3 years ago by ★ 7.4k • written 19.3 years ago by ▴ 10
0
votes
5
replies
1.7k
views
Rgraphviz problem
annotate graph Rgraphviz annotate graph Rgraphviz
updated 17.4 years ago by ★ 7.4k • written 17.4 years ago by ▴ 450
50 results • Page 1 of 1
Recent ...
Replies
Answer: Counter-directional LFC shrinkage by swbarnes2 ★ 1.4k
The y axes in those plots are logged. The average for condition1 is going to be higher than condition2 because of the very high outliers. …
Comment: Cannot install oligo on Fedora by Guido Hooiveld ★ 4.0k
Thanks for all suggestions and getting to the bottom of this! Unfortunately, fixing C code goes way above my skill level, so I cannot contr…
Comment: Cannot install oligo on Fedora by James W. MacDonald 66k
I think the solution is for the C code in `oligo` to be updated to work with more modern versions of `zlib`. The `zlibbioc` package is real…
Comment: Error in gseDO function by Guido Hooiveld ★ 4.0k
I don't fully understand what you are asking... Yet, in my opinion it doesn't make sense to use the results of only 12 genes for ORA (nor G…
Comment: Counter-directional LFC shrinkage by ATpoint ★ 4.2k
Is this RNA-seq? The unshrunken MA-plot looks very odd and indicates that normalization is completely offset.
Votes
A: DESeq2: add annotations (from data frame) to DESeqDataSet
Answer: Error in gseDO function
Comment: what the test method for enrichGO in clusterProfiler?
A: Comparison between two different group's pathway analysis results
DiffBind Batch Effect
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