Showing : annotate • reset
6
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5
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14k
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Installation of package DESeq2
deseq2 rcurl annotate genefilter geneplotter
updated 7.4 years ago by 25k • written 7.4 years ago by ▴ 10
5
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2
replies
10k
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Probe to gene id conversion
annotate biomart probe to gene id
updated 9.6 years ago by 65k • written 9.6 years ago by ▴ 20
4
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3
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1.5k
views
SingleCellExperiment: Edit cluster IDs in colLabels
scran Clustering SingleCellExperiment annotate cluster
updated 21 months ago by 65k • written 21 months ago by ▴ 10
3
votes
6
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2.6k
views
RSQLite::dbGetPreparedQuery() is deprecated in AnnotationForge
annotation microarray annotate annotationforge
7.3 years ago MOD • 0
3
votes
1
reply
7.0k
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Annotation for a GEO data set
Annotation annotate GEOquery Annotation annotate GEOquery
updated 14.2 years ago by 21k • written 14.2 years ago by ▴ 20
3
votes
5
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5.1k
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getBM returns shorter vectors than values
annotate biomaRt oligo annotate biomaRt oligo
updated 10.7 years ago by ▴ 540 • written 10.7 years ago by ▴ 380
2
votes
1
reply
1.1k
views
Use matchPattern for large DNAStrings
biostrings annotate
updated 8.0 years ago by 16k • written 8.0 years ago by ▴ 40
2
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2
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1.8k
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BLAST export library 'annotate'
blast annotate biostrings export fasta
9.5 years ago b.stielow • 0
2
votes
1
reply
662
views
The best pacakge to annotate a set of regions
annotate
updated 3.6 years ago by 65k • written 3.6 years ago by ▴ 20
2
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1
reply
1.3k
views
HTqPCR- gene names not maintained in limmaCtData
annotate ddCt HTqPCR annotate ddCt HTqPCR
10.2 years ago Cornwell, Adam ▴ 110
1
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2
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2.6k
views
mapping mouse ENSEMBL ids to human gene symbol
Annotation AnnotationDbi annotate
updated 2.8 years ago by 65k • written 2.8 years ago by • 0
1
vote
2
replies
1.6k
views
about library(Homo.sapiens) from TxDb.Hsapiens.UCSC.hg18.knownGene
annotate
9.5 years ago Bogdan ▴ 670
1
vote
2
replies
2.2k
views
blastSequences queries failing due to BLAST switch to https?
annotate blastSequences BLAST https
updated 7.6 years ago by 25k • written 7.6 years ago by • 0
1
vote
8
replies
3.7k
views
GRanges apply functions
GO annotate GO annotate
updated 9.9 years ago by ★ 4.2k • written 9.9 years ago by ▴ 380
1
vote
2
replies
3.4k
views
mm10 goseq supported genome
annotate goseq annotate goseq
updated 11.3 years ago by ▴ 310 • written 11.3 years ago by ▴ 140
0
votes
4
replies
1.3k
views
error in function reduce from girafe
Annotation annotate biomaRt IRanges girafe Annotation annotate biomaRt IRanges girafe
updated 13.9 years ago by ▴ 450 • written 13.9 years ago by ▴ 810
0
votes
2
replies
5.1k
views
Packages not getting installed
Microarray GO annotate Microarray GO annotate
updated 15.0 years ago by 65k • written 15.0 years ago by ▴ 90
0
votes
0
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709
views
AnnBuilder package: problem with basefile type of "refseq" or "gbNRef"
Annotation probe annotate AnnBuilder Annotation probe annotate AnnBuilder
17.8 years ago Luo Weijun ★ 1.6k
0
votes
0
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1.2k
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confusion about nomenclature of illumina annotationpackages
BiocViews Annotation Cancer Mus musculus illuminaHumanv1 illuminaHumanv2 probe annotate
15.8 years ago Lynn Amon ▴ 280
0
votes
4
replies
2.1k
views
disagreement between biomaRt and topGO
GO hgu133plus2 annotate geneplotter graph Rgraphviz PROcess goTools biomaRt Category GO
updated 16.7 years ago by ▴ 500 • written 16.7 years ago by ★ 1.4k
0
votes
3
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1.4k
views
Help with annotation packages
Microarray Annotation GO Anopheles gambiae probe annotate limma AnnBuilder biomaRt GO
updated 18.2 years ago by ▴ 420 • written 18.2 years ago by ▴ 460
0
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1
reply
1.7k
views
Rv1.91 or v2.0.0 on MacOS 10.3.5
SAGE GO Kidney hgu95av2 hu6800 rae230a cdf Biobase Ruuid DynDoc annotate edd multtest
updated 19.6 years ago by ★ 5.5k • written 19.6 years ago by ▴ 100
0
votes
8
replies
2.0k
views
AnnBuilder and Kegg
Pathways GO Survival Cancer Organism annotate affydata vsn AnnBuilder globaltest GO vsn
updated 17.5 years ago by ▴ 190 • written 17.5 years ago by ★ 2.9k
0
votes
0
replies
2.1k
views
Welcome
Biobase annotate Biobase annotate
22.5 years ago rgentleman ★ 5.5k
0
votes
1
reply
1.1k
views
tkctk widgets
GUI annotate affy GUI annotate affy
updated 22.2 years ago by ★ 2.9k • written 22.2 years ago by ★ 5.5k
0
votes
0
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1.5k
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peer review process/DATE CORRECTION
Biobase annotate edd genefilter geneplotter rhdf5 multtest ROC tkWidgets affy AnnBuilder
22.1 years ago Vincent J. Carey, Jr. 6.7k
0
votes
2
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941
views
bug in getBioC.R
annotate genefilter annotate genefilter
updated 22.0 years ago by ▴ 530 • written 22.0 years ago by ★ 1.4k
0
votes
1
reply
1.6k
views
Problems with url/download and http_proxy
Biobase annotate edd geneplotter tkWidgets ASSIGN Biobase annotate edd geneplotter
updated 21.9 years ago by ▴ 50 • written 21.9 years ago by ▴ 460
0
votes
0
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835
views
Alert: Up coming changes to annotate
Annotation annotate Annotation annotate
21.9 years ago John Zhang ★ 2.9k
0
votes
1
reply
840
views
mgu74av2
Annotation Cancer mgu74a mgu74av2 annotate Annotation Cancer mgu74a mgu74av2 annotate
updated 21.5 years ago by ★ 2.9k • written 21.5 years ago by ▴ 10
0
votes
0
replies
795
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BioConductor beginner needing to annotate clones
Microarray GUI annotate Microarray GUI annotate
20.5 years ago Law, Annie ▴ 70
0
votes
2
replies
1.8k
views
Bioconductor Digest, Vol 138, Issue 27
annotate biovizBase ggbio UniProt.ws Pbase annotate biovizBase ggbio UniProt.ws Pbase
updated 9.7 years ago by ▴ 490 • written 9.7 years ago by 1.6k
0
votes
4
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1.7k
views
[R-SIG-Mac] Mac os x graphviz-Rgraphviz problem
Biobase annotate geneplotter graph Rgraphviz BUS Biobase annotate geneplotter graph BUS
updated 17.3 years ago by ★ 7.4k • written 17.3 years ago by ★ 6.5k
0
votes
5
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2.6k
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Issues about how to filter and annotate the MoGene-2_0-st and MoEx-1_0-st-v1 array probe sets
Annotation probe annotate annaffy oligo ReportingTools Annotation probe annotate annaffy
updated 9.9 years ago by ▴ 160 • written 9.9 years ago by 65k
0
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0
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1.3k
views
Error in makeOrgPackageFromNCBI
GO OrgDb annotate GOstats GO OrgDb annotate GOstats
10.9 years ago Chris Whelan ▴ 60
0
votes
5
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1.7k
views
Rgraphviz problem
annotate graph Rgraphviz annotate graph Rgraphviz
updated 17.3 years ago by ★ 7.4k • written 17.3 years ago by ▴ 450
0
votes
0
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1.1k
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UPDATE: a problem with Metadat package: hgu133a2 ----- Fwd: RE: Should BE964473 be mapped to Hs. 333958 or Hs. 282260?
Annotation GO Cancer hgu95av2 hu6800 probe annotate affy graph RBGL GOstats Annotation
18.6 years ago Shi, Tao ▴ 720
0
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0
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883
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PSB 2004 - call for papers
annotate annotate
21.0 years ago Wang, Hui ▴ 170
0
votes
1
reply
892
views
Golub example from Gentleman and Carey
Annotation annotate genefilter Annotation annotate genefilter
updated 21.0 years ago by 6.7k • written 21.0 years ago by ▴ 150
0
votes
1
reply
1.1k
views
Problems accessing the Milan package through the vignettes Explorer
Cancer Biobase annotate edd geneplotter multtest tkWidgets affydata vsn graph hexbin
updated 21.0 years ago by ★ 2.9k • written 21.0 years ago by ▴ 130
0
votes
1
reply
735
views
How to plot the edge with number in Rgraphviz?
annotate annotate
updated 20.8 years ago by ★ 3.9k • written 20.8 years ago by ▴ 80
0
votes
1
reply
1.0k
views
Querying PubMed Database
hgu95av2 rae230a annotate affy affydata hgu95av2 rae230a annotate affy affydata
updated 20.7 years ago by 6.7k • written 20.7 years ago by ▴ 60
0
votes
0
replies
654
views
URLs in annotate
annotate annotate
20.6 years ago Sean Davis 21k
0
votes
1
reply
1.1k
views
Annotating yeast ORFs with GO and KEGG
GO Yeast annotate Category GO Yeast annotate Category
updated 20.5 years ago by ▴ 70 • written 20.5 years ago by ▴ 80
0
votes
1
reply
731
views
Re: annotate / get
rgu34a annotate rgu34a annotate
updated 21.0 years ago by ★ 2.9k • written 21.0 years ago by ▴ 50
0
votes
0
replies
1.1k
views
Re: Annotate clones Bioconductor beginner
Microarray Annotation GUI annotate widgetTools AnnBuilder Microarray Annotation GUI
20.5 years ago John Zhang ★ 2.9k
0
votes
18
replies
3.7k
views
Genbank to Unigene IDs
annotate AnnBuilder annotate AnnBuilder
updated 20.1 years ago by ▴ 10 • written 20.1 years ago by 50k
0
votes
0
replies
702
views
A summary of answers to get affyid from locusid
annotate annotate
20.0 years ago Ainong Zhou ▴ 20
0
votes
0
replies
747
views
Problem with obtaining annotation of mgu74av2 chip
Cancer mgu74av2 probe annotate annaffy Cancer mgu74av2 probe annotate annaffy
20.0 years ago Richard Friedman ★ 2.0k
0
votes
2
replies
2.2k
views
locateVariants - error with GRanges query?
annotate annotate
11.5 years ago Lescai, Francesco ▴ 380
50 results • Page 1 of 1
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Comment: all variables in design formula must be columns in colData (Deseq2) error by Galina • 0
thank you!
Comment: all variables in design formula must be columns in colData (Deseq2) error by ATpoint ★ 4.1k
coldata_rat <- data.frame(conditions=..., batch=...)
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by robersy • 0
Thank you all for your comments. I will follow your suggestions.
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by Ken C • 0
Hi Michael, thanks a lot for your prompt reply! Not sure if this is appropriate or if you are the right person to ask -- is there anything…
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by Ken C • 0
Well, if I look at genes with baseMean>50, then the relative absolute difference in log2FoldChange (say over the absolute log2FoldChange of…
Votes
biomaRt not working - lazy table error
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
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