Showing : clustering • reset
0
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3
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2.1k
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maSigPro genes from clusters
masigpro clustering
updated 12 days ago by • 0 • written 8.0 years ago by • 0
0
votes
1
reply
997
views
ConsensusClusterPlus without figures
clustering
updated 12 weeks ago by • 0 • written 6.6 years ago by • 0
2
votes
3
replies
486
views
"could not find function "readTSGE" in package ctsGE" Error occurs when trying to follow ctsGE package instructions.
GeneExpression Clustering ctsGE
3 months ago jbgnielson • 0
0
votes
3
replies
600
views
Clustering coefficient of synteny network
Network syntenet Clustering coefficient
10 months ago Alexandros • 0
0
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2
replies
4.6k
views
When is centering and scaling needed before doing hierarchical clustering?
clustering hierarchical clustering
written 6.8 years ago by ▴ 20
0
votes
2
replies
777
views
Scaling and normalization by deconvolution of SMART-Seq 2 data
scran Clustering SingleCell Normalization
14 months ago Assa Yeroslaviz ★ 1.5k
0
votes
1
reply
1.2k
views
HTqPCR useful for ChIP data ?
Preprocessing Clustering HTqPCR Preprocessing Clustering HTqPCR
updated 19 months ago by • 0 • written 12.4 years ago by ▴ 10
0
votes
1
reply
849
views
WGCNA - Network construction and module detection
gene Clustering wgcna flashclust
updated 21 months ago by ▴ 50 • written 21 months ago by ▴ 20
0
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0
replies
452
views
maSigPro visualizing individually each plot from each cluster
plot maSigPro Clustering
21 months ago oseias.rf.junior • 0
0
votes
1
reply
654
views
DeSeq Strategies for run to run Replication
DESeq2 Normalization Clustering replicate
updated 21 months ago by 42k • written 21 months ago by • 0
4
votes
3
replies
1.5k
views
SingleCellExperiment: Edit cluster IDs in colLabels
scran Clustering SingleCellExperiment annotate cluster
updated 22 months ago by 66k • written 22 months ago by ▴ 10
2
votes
2
replies
1.2k
views
How to judge DEG analysis of these samples could be done by using limma::voom
limma Clustering voom RNA-Seq
22 months ago Yang Shi ▴ 10
0
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0
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781
views
The gene clusters from the WGCNA dendrogram output are not in order
Clustering WGCNA
2.1 years ago chiwut.wong • 0
0
votes
0
replies
788
views
Only 1 gene/ feature is present in module after WGCNA analysis
RNASeq Clustering cluster WGCNA
2.1 years ago chiwut.wong • 0
0
votes
1
reply
615
views
Error running hierClust
hierClust R SNPs clustering
updated 2.2 years ago by 66k • written 2.2 years ago by • 0
0
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0
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877
views
ConsensusClusterPlus: annotate a class to the heatmap
Clustering ConsensusClusterPlus
2.7 years ago Gian ▴ 30
2
votes
6
replies
3.0k
views
Clustering and bootstrapping of RNASeq samples
clustering pvclust vsd edgeR rnaseq
written 8.0 years ago by ▴ 90
3
votes
2
replies
2.2k
views
Clustering differentially expressed genes in response to multiple treatments (using edgeR)
edger complexheatmap R clustering
updated 4.1 years ago by 50k • written 4.1 years ago by • 0
0
votes
4
replies
1.4k
views
coseq plotting error: no method for coercing this S4 class to a vector
coseq RNAseq clustering
updated 4.3 years ago by ▴ 80 • written 4.4 years ago by ▴ 30
0
votes
1
reply
1.9k
views
Evaluating HCPC clusters from FactoMineR using cluster.stats from fpc library
clustering r fpc FactoMineR
4.8 years ago anahochmanova • 0
0
votes
3
replies
952
views
How to find number of patients (percentage of given population) having high expression of gene A in given microarray data ?
microarray r clustering high expressed genes
updated 5.0 years ago by 66k • written 5.0 years ago by • 0
1
vote
6
replies
1.7k
views
edgeR removing batch effect before using expression data for clustering
edger r batcheffect clustering removeBatchEffect
updated 5.0 years ago by 66k • written 5.0 years ago by ▴ 110
0
votes
1
reply
1.2k
views
Consensus Cluster Plus pre-computed distance matrix
consensusclusterplus distance clustering
updated 5.2 years ago by ▴ 420 • written 5.2 years ago by • 0
1
vote
2
replies
1.4k
views
Dunn Index for Clusters from scRNA-Seq
scRNA-Seq clustering scater scran dunn index
updated 5.2 years ago by ★ 28k • written 5.2 years ago by ▴ 60
2
votes
4
replies
2.4k
views
Silhouette Plots for Clustering Quality (Multiple Algorithm)
scRNA-Seq RNA-Seq Clustering Silhouette Plot
updated 5.3 years ago by ★ 28k • written 5.3 years ago by ▴ 60
2
votes
6
replies
1.7k
views
Change the number of clusters with scater
scater scran scrnaseq clustering
updated 5.5 years ago by ★ 28k • written 5.5 years ago by ▴ 20
0
votes
3
replies
1.2k
views
Coverage profile comparison
Targeted sequencing correlation coverage euclid clustering
5.6 years ago faramer86 • 0
3
votes
3
replies
1.1k
views
how to plot trends for differentialy expressed genes from normalized count matrix (EdgeR)
edger clustering visualization
updated 5.7 years ago by 66k • written 5.7 years ago by ▴ 10
0
votes
0
replies
677
views
DESeq aligned with HOPACH for clustering
clustering
5.8 years ago ss • 0
7
votes
6
replies
5.8k
views
scaling data for clustering heat map
edger heatmap clustering differential gene expression rnaseq
updated 6.0 years ago by 50k • written 6.0 years ago by ▴ 60
0
votes
4
replies
1.6k
views
Why SPADE package has been removed from bioconductor?
spade release remove clustering
updated 6.0 years ago by 66k • written 6.0 years ago by • 0
0
votes
1
reply
1.0k
views
Global Trend Analysis using results from EdgeR
EdgeR clustering differential gene expression consensusclusterplus kmeans
updated 6.1 years ago by ★ 28k • written 6.1 years ago by • 0
0
votes
0
replies
1.1k
views
Add samples labels with ConsensusClusterPlus
consensusclusterplus microarray clustering
6.2 years ago aagata.szymanek • 0
1
vote
0
replies
1.4k
views
Job: UK/EU funded PhD Studentship: Detecting novel subtypes of cancer using data science and machine learning
PhD clustering cancer Job
6.4 years ago • updated 6.2 years ago Daniel Brewer ▴ 100
1
vote
3
replies
1.2k
views
Clustering of samples based on specific gene sets
microarray differential gene expression gene set analysis clustering
6.2 years ago cherlyn.t • 0
0
votes
4
replies
1.3k
views
Gene clusters based on gene expression across samples
kmeans gene expression clustering
6.6 years ago Jane Merlevede ▴ 90
0
votes
2
replies
2.0k
views
How to use RUVSeq in clustering problems?
ruvseq rna-seq clustering
updated 6.6 years ago by ▴ 950 • written 6.7 years ago by ▴ 50
0
votes
5
replies
2.5k
views
Choosing genes for clustering
limma clustering differential gene expression hierarchical clustering feature selection
6.7 years ago lirongrossmann ▴ 80
1
vote
3
replies
1.5k
views
Selecting genes that best separate between two groups
limma genefilter ttest clustering TPM
6.7 years ago lirongrossmann ▴ 80
11
votes
8
replies
10k
views
Limma and batch effect
limma differential gene expression clustering removebatcheffect
updated 6.7 years ago by 50k • written 6.7 years ago by ▴ 80
0
votes
1
reply
1.9k
views
Observation/case weighting in cluster analysis in R
hclust hierarchical clustering clustering weight
updated 6.8 years ago by ★ 28k • written 6.8 years ago by • 0
6
votes
2
replies
5.4k
views
Cell type specific cell markers for Seurat based analysis.
single cell seurat clustering
updated 6.9 years ago by ▴ 40 • written 6.9 years ago by ▴ 20
1
vote
4
replies
1.5k
views
OrgDb for Tetrahymena thermophila
annotation clustering
updated 7.0 years ago by ★ 4.0k • written 7.0 years ago by • 0
1
vote
1
reply
6.3k
views
WGCNA: Different Detect Cut Heights Across Multiple Blocks
wgcna clustering gene expression
updated 7.1 years ago by ★ 3.0k • written 7.1 years ago by ▴ 10
3
votes
1
reply
9.8k
views
Error using function NbClust regarding multiple values in the argument "index" of package NbClust for getting the optimal number of clusters of a dat…
NbClust clustering looping list object function creation
updated 7.2 years ago by ▴ 20 • written 8.7 years ago by ▴ 830
1
vote
2
replies
2.2k
views
How to adjust the parameters of WGCNA
WGCNA RNA-seq co-expression network module clustering
updated 7.3 years ago by ★ 3.0k • written 7.3 years ago by • 0
1
vote
1
reply
2.3k
views
ConsensusClusterPlus matrix error
bioconductor clustering consensusclusterplus
7.3 years ago kyn ▴ 10
0
votes
5
replies
2.6k
views
Questions on using clusterProfiler
clustering clusterprofiler
7.6 years ago zhangducsu • 0
0
votes
1
reply
1.6k
views
Question about seed in ConsensusClusterPlus, can't repeat the result
bioconductor consensusclusterplus clustering
7.6 years ago afraTW • 0
0
votes
0
replies
1.2k
views
Running Mclust package in R, using maximum a posteriori (MAP)
r mclust clustering
8.0 years ago mabdulsa • 0
50 results • Page 1 of 1
Recent ...
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Comment: How to run allelic imbalance in apeglm by parayod376 • 0
Which I care about. [Papa's games][1] thank you for sharing the information. [1]: https://papasgamesfree.github.io
Comment: Cannot install oligo on Fedora by James W. MacDonald 66k
FYI, I emailed Benilton and he says he's working on a fix, so stay tuned!
Answer: Error in render R qmd document (could not find function "process") by James W. MacDonald 66k
If you have functions in another R document, you have to `source` that document to load the functions into your workspace. Just like you wo…
Comment: Using featureCounts with SAF annotation file gives "Error: only GTF files contai by atan • 0
Thank you! I ended up running it with a gtf on command line, partially because I couldn't figure out how to list multiple files in R for in…
Comment: Using featureCounts with SAF annotation file gives "Error: only GTF files contai by atan • 0
For some reason, that's still not working for me on command line. I ended up figuring out another way around, though, by converting the g…
Votes
Reduce the number of nodes appear in the cnetplot of clusterprofiler
A: DESeq2: add annotations (from data frame) to DESeqDataSet
Answer: Error in gseDO function
Comment: what the test method for enrichGO in clusterProfiler?
A: Comparison between two different group's pathway analysis results
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