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color
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reset
0
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685
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Gviz: set colors for UTRs
plot
color
Gviz
utr
3.1 years ago
ginlucks
• 0
0
votes
3
replies
1.5k
views
Change color of Diffbind's PCA and clustered heatmap plot()
DiffBind
plot
color
updated 4.3 years ago by
Rory Stark
★ 5.2k • written 4.5 years ago by
melnuesch
▴ 10
0
votes
4
replies
6.9k
views
Limma Volcano Plot Highlight Top Genes by Color
limma
microarray
volcanoplot
color
updated 5.6 years ago by
Gordon Smyth
50k • written 5.6 years ago by
dmm204
• 0
0
votes
2
replies
1.9k
views
Controlling colours assigned to order in DeSeq2 plot in phyloseq
phyloseq
color
ggplot2
updated 7.2 years ago by
Michael Love
42k • written 7.2 years ago by
sarahmacdonald86
• 0
1
vote
2
replies
1.2k
views
How can I set custom colors in DiffBind using dba.plotHeatmap
diffbind
color
updated 7.4 years ago by
Gord Brown
▴ 650 • written 7.4 years ago by
Gary
▴ 20
0
votes
1
reply
1.2k
views
HowTo? Provide a different fill color for each rectangle in an Gviz AnnotationTrack ?
Gviz
color
updated 7.8 years ago by
florian.hahne@novartis.com
★ 1.6k • written 7.8 years ago by
Malcolm Cook
★ 1.6k
0
votes
0
replies
1.0k
views
Mixed up colors in GViz GeneRegionTrack
color
GeneRegionTrack
7.9 years ago
senanu.pearson
• 0
4
votes
2
replies
4.2k
views
DESeq2 color coding
DESeq2
color
R package
updated 8.0 years ago by
Mike Smith
★ 6.5k • written 8.0 years ago by
ChIP-Tease
• 0
2
votes
3
replies
2.3k
views
No color support in ggbio for autoplot
ggbio
autoplot
color
vignette
updated 8.3 years ago by
aaron
▴ 10 • written 8.3 years ago by
timothypyork
• 0
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Answer: LRT, more than two conditions and pairwise comparisons
by
James W. MacDonald
65k
Unless you think the different lines or tissues will have very different within-group variances, you should just analyze together and make …
Answer: How to remove batch effect to combine RNAseq data from 2 different experiments?
by
James W. MacDonald
65k
It appears that batch is orthogonal to the treatment, so you can just fit a batch effect in your model.
Answer: Control group between 2 batches have different expression in RNAseq data
by
James W. MacDonald
65k
Since batch is orthogonal to the treatment, you just add a batch factor to your model.
Answer: Subsetting RNAseq data | voomaByGroup()
by
Anna
• 0
Hi Gordon. Thank you so much. Your reply is extremely helpful, and I feel more confident moving forward with the analysis. Also, very inte…
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
Michael Love
42k
edgeR used a prior count which stabilizes LFC while DESeq2 does not. Note that the SE are larger in these cases so you don't have experime…
Votes
Answer: Subsetting RNAseq data | voomaByGroup()
biomaRt not working - lazy table error
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
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