Showing : easyrnaseq • reset
1
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2
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2.4k
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mgcv not updating
mgcv easyRNASeq
updated 3.3 years ago by 25k • written 3.3 years ago by ▴ 10
0
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3
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1.2k
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simpleRNASeq easyRNAseq warnings edgeR error
simplernaseq easyrnaseq edger DEformats
updated 6.3 years ago by ▴ 320 • written 6.4 years ago by • 0
4
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5
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1.4k
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Warning: missing reverse strand option in easyRNASeq.
easyrnaseq rnaseq strand
updated 6.9 years ago by 16k • written 6.9 years ago by ▴ 10
0
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1
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1.4k
views
simpleRNASeq stopped running (related to S4 vectors?)
simplernaseq easyrnaseq s4vectors
updated 8.4 years ago by ▴ 320 • written 8.4 years ago by • 0
0
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2
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1.6k
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Package installation errors for Bioconductor and easyRNASeq
installation biocinstaller easyrnaseq
updated 8.4 years ago by 25k • written 8.4 years ago by • 0
2
votes
2
replies
1.4k
views
Error reading BAM file with duplicated header in easyRNAseq and GenomicAlignments
software error easyrnaseq genomicalignments bam
updated 8.6 years ago by 25k • written 8.7 years ago by ▴ 10
0
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5
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2.3k
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easyRNAseq annotation file
easyrnaseq annotation
8.7 years ago kylvalda • 0
0
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17
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2.8k
views
Issue with easyRNASeq
easyRNASeq error
8.9 years ago ea11g0 • 0
1
vote
13
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3.0k
views
Several issues with the package easyRNASeq
easyrnaseq bug
8.9 years ago Michael Dondrup ▴ 10
0
votes
2
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1.3k
views
simpleRNASeq error importing BAM files
simpleRNASeq easyRNASeq
updated 8.9 years ago by 65k • written 8.9 years ago by • 0
0
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6
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1.7k
views
easyRNASeq: "Error in IRangesList"
easyRNASeq
9.0 years ago • updated 8.9 years ago surjray • 0
0
votes
5
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2.6k
views
count tables created with easyRNASeq and the rpkm() function from edgeR
easyrnaseq edger rpkm
updated 9.3 years ago by ▴ 320 • written 9.3 years ago by ▴ 80
2
votes
6
replies
2.0k
views
easyRNAseq says Your annotation is not in sync with your alignments!
easyRNAseq
updated 9.3 years ago by ▴ 320 • written 9.3 years ago by • 0
0
votes
1
reply
3.2k
views
easyRNASeq error: Error in aggregate.data.frame(as.data.frame(x), ...) : no rows to aggregate
easyrnaseq
9.5 years ago sylvian • 0
1
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5
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2.1k
views
Getting a count matrix from a SummerizedExpriment with EasyRNASeq
easyrnaseq
9.6 years ago Sylvain Foisy ▴ 80
0
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1
reply
1.2k
views
Devel version of easyRNASeq: using the simpleRNASeq method gives an error
easyRNASeq easyRNASeq
updated 10.2 years ago by ▴ 320 • written 10.2 years ago by ▴ 80
0
votes
2
replies
1.3k
views
Devel version of easyRNASeq: using the simpleRNASeq method gives an error
Annotation easyRNASeq Annotation easyRNASeq
updated 10.2 years ago by ▴ 80 • written 10.2 years ago by ▴ 320
0
votes
1
reply
1.4k
views
easyRNASeq packages: overlapping exons warning unsolved (?) and use of paired end information
Coverage Annotation GO Cancer Organism edgeR DESeq GenomicRanges Rsubread easyRNASeq GO
updated 10.5 years ago by ▴ 320 • written 10.5 years ago by 50k
0
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1
reply
1.9k
views
Using a countDataSet as input data in DESeq2
easyRNASeq easyRNASeq
updated 10.5 years ago by 42k • written 10.5 years ago by ★ 13k
0
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0
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1.2k
views
easyRNASeq packages: overlapping exons warning unsolved (?) and use of paired end information
Coverage Annotation GO Cancer Organism edgeR DESeq GenomicRanges easyRNASeq Coverage GO
10.5 years ago Nicolas Delhomme ▴ 320
0
votes
2
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1.5k
views
easyRNAseq and DEseq for no replicate RNAseq
RNASeq PROcess easyRNASeq RNASeq PROcess easyRNASeq
updated 10.5 years ago by ▴ 320 • written 10.5 years ago by ▴ 10
0
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8
replies
2.0k
views
Using easyRNASeq package: question about BAM/BAI and links to them
easyRNASeq easyRNASeq
updated 10.5 years ago by ▴ 80 • written 10.5 years ago by ▴ 80
0
votes
7
replies
2.6k
views
GTF file error when using easyRNAseq�
Annotation Organism BSgenome BSgenome DESeq easyRNASeq Annotation Organism BSgenome DESeq
updated 10.5 years ago by ★ 1.2k • written 10.5 years ago by ★ 13k
0
votes
1
reply
1.4k
views
eayRNASeq with Ensemble GRCh37 help
Annotation Organism easyRNASeq DESeq2 Annotation Organism easyRNASeq DESeq2
updated 10.7 years ago by ★ 1.2k • written 10.7 years ago by ▴ 10
0
votes
5
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1.7k
views
EasyRNAseq - error in building count table - Error in unlist
Sequencing RNASeq edgeR easyRNASeq Sequencing RNASeq edgeR easyRNASeq
updated 10.7 years ago by ★ 1.2k • written 10.7 years ago by ★ 13k
0
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0
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1.2k
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error in "count" for SummarizedExperiment in easyRNASeq
easyRNASeq DESeq2 easyRNASeq DESeq2
10.7 years ago Lescai, Francesco ▴ 380
0
votes
0
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1.1k
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easyRNASeq packages: overlapping exons warning unsolved (?) and use of paired end information
Annotation Organism edgeR DESeq easyRNASeq Annotation Organism edgeR DESeq easyRNASeq
11.0 years ago Gabriele Zoppoli ▴ 50
0
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1
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1.1k
views
it is strange that I cannot get the fpkm by using easyRNASeq
Annotation BSgenome BSgenome easyRNASeq Annotation BSgenome BSgenome easyRNASeq
updated 11.1 years ago by ▴ 30 • written 11.1 years ago by ★ 13k
0
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1
reply
1.4k
views
some problems of easyRNASeq� : about the gtf files
Annotation easyRNASeq Annotation easyRNASeq
updated 11.2 years ago by ★ 1.2k • written 11.2 years ago by ★ 13k
0
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0
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1.3k
views
RPKM calculation genewise
Normalization Visualization easyRNASeq Normalization Visualization easyRNASeq
11.2 years ago delhomme@embl.de ★ 1.2k
0
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0
replies
853
views
easyRNA adapting annotations to avoid overlapping synthetic exons
Annotation Organism easyRNASeq Annotation Organism easyRNASeq
11.2 years ago delhomme@embl.de ★ 1.2k
0
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0
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974
views
easyRNA adapting annotations to avoid overlapping synthetic exons
Annotation Organism easyRNASeq Annotation Organism easyRNASeq
11.2 years ago Bayles, Darrell ▴ 10
0
votes
0
replies
888
views
easyRNASeq read counts varying when recounting same sample!
Annotation GO biomaRt easyRNASeq Annotation GO biomaRt easyRNASeq
11.3 years ago delhomme@embl.de ★ 1.2k
0
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0
replies
803
views
easyRNASeq read counts varying when recounting same sample!
biomaRt easyRNASeq biomaRt easyRNASeq
11.3 years ago René ▴ 30
0
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1
reply
1.4k
views
Problems in running easyRNASeq
Annotation Organism DEGseq easyRNASeq Annotation Organism DEGseq easyRNASeq
updated 11.3 years ago by ★ 1.2k • written 11.3 years ago by ★ 13k
0
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2
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2.2k
views
using easyRNASeq to calculate RPKM values
easyRNASeq easyRNASeq
updated 11.3 years ago by ★ 1.2k • written 11.3 years ago by ▴ 260
0
votes
1
reply
1.3k
views
easyRNAseq remove overlapping features
Annotation BSgenome BSgenome IRanges easyRNASeq Annotation BSgenome BSgenome IRanges
updated 11.4 years ago by ★ 1.2k • written 11.4 years ago by ▴ 150
0
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0
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1.6k
views
Error message with transcriptCounts(easyRNASeq) performed with gtf file generated with cuffmerge
RNASeq Annotation Normalization Cancer Organism BSgenome BSgenome easyRNASeq RNASeq
11.4 years ago Richard Friedman ★ 2.0k
0
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7
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2.2k
views
Getting counts for previously undetected transcripts and genes with easyRNASeq: comparison to Cufflinks
RNASeq Annotation Cancer edgeR cqn easyRNASeq RNASeq Annotation Cancer edgeR cqn
updated 11.5 years ago by ★ 1.2k • written 11.5 years ago by ★ 2.0k
0
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2
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1.3k
views
error message with easyRNASeq use case
RNASeq Cancer Organism easyRNASeq RNASeq Cancer Organism easyRNASeq
updated 11.5 years ago by 65k • written 11.5 years ago by ★ 2.0k
0
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1
reply
1.0k
views
easyRNASeq and edgeR
BSgenome BSgenome edgeR easyRNASeq BSgenome BSgenome edgeR easyRNASeq
updated 11.5 years ago by ★ 1.2k • written 11.5 years ago by ★ 13k
0
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3
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1.9k
views
Error: 'devel' version requires a more recent R
GUI Cancer easyRNASeq GUI Cancer easyRNASeq
updated 11.5 years ago by 21k • written 11.5 years ago by ★ 2.0k
0
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0
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1.3k
views
get synthetic exon dataset with easyRNASeq
RNASeq Alignment Annotation Normalization GO PROcess GenomicRanges DEXSeq easyRNASeq GO
11.5 years ago delhomme@embl.de ★ 1.2k
0
votes
1
reply
1.4k
views
error in easyRNASeq
RNASeq BSgenome BSgenome easyRNASeq RNASeq BSgenome BSgenome easyRNASeq
updated 11.5 years ago by ★ 1.2k • written 11.5 years ago by ▴ 510
0
votes
0
replies
764
views
bam files in sub-directories
easyRNASeq easyRNASeq
11.6 years ago RenéBöttcher ▴ 20
0
votes
1
reply
861
views
bam files in sub-directories
easyRNASeq easyRNASeq
updated 11.6 years ago by ★ 1.2k • written 11.6 years ago by ★ 13k
0
votes
0
replies
864
views
question on easyRNASeq developer version
GLAD easyRNASeq GLAD easyRNASeq
11.6 years ago delhomme@embl.de ★ 1.2k
0
votes
0
replies
916
views
get synthetic exon dataset with easyRNASeq
RNASeq Annotation Normalization GO PROcess easyRNASeq RNASeq Annotation Normalization GO
11.6 years ago delhomme@embl.de ★ 1.2k
0
votes
1
reply
863
views
warnings on easyRNASeq package
Annotation Organism PROcess GenomicRanges easyRNASeq Annotation Organism PROcess
updated 11.6 years ago by ▴ 10 • written 11.6 years ago by ★ 1.2k
0
votes
2
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1.0k
views
RNAseq object
RNASeq DESeq easyRNASeq RNASeq DESeq easyRNASeq
updated 11.6 years ago by ★ 4.2k • written 11.6 years ago by ★ 13k
50 results • Page 1 of 1
Recent ...
Replies
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by jane • 0
Your material was totally correct, therefore I was able to learn what I needed to know. I'd want to convey my heartfelt gratitude for shari…
Comment: all variables in design formula must be columns in colData (Deseq2) error by Galina • 0
thank you!
Comment: all variables in design formula must be columns in colData (Deseq2) error by ATpoint ★ 4.1k
coldata_rat <- data.frame(conditions=..., batch=...)
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by robersy • 0
Thank you all for your comments. I will follow your suggestions.
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by Ken C • 0
Hi Michael, thanks a lot for your prompt reply! Not sure if this is appropriate or if you are the right person to ask -- is there anything…
Votes
biomaRt not working - lazy table error
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
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