Bioconductor Ensembldb

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ensembldb biomaRt ensemblrelease

4 days ago Aleena ▴ 30

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306

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ensembldb

updated 24 days ago by James W. MacDonald 65k • written 24 days ago by Fara • 0

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5.8k

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ensembl ensembldb plant arabidopsis thaliana annotationhub

updated 18 hours ago by Daniele • 0 • written 5.5 years ago by Guido Hooiveld ★ 4.0k

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190

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ensembldb transcriptome genome coordinateconversion

updated 6 weeks ago by Michael Love 42k • written 7 weeks ago by saadmurtazakhan ▴ 10

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246

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TxDb.Mmusculus.UCSC.mm9.knownGene ensembldb GenomicFeatures Mus_musculus

updated 3 months ago by James W. MacDonald 65k • written 3 months ago by ramonmassoni ▴ 10

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361

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ensembldb genomei GenomeInfoDb

3 months ago Kai Hu ▴ 70

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247

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ensembldb biomaRt

updated 3 months ago by Robin • 0 • written 3 months ago by Pez ▴ 10

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524

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Rstudio cDNA ensembldb NCBI

5 months ago R_Page • 0

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848

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RStudio convert ensembldb NCBI

6 months ago j_denton • 0

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589

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GO ensembldb

7 months ago • updated 6 months ago Rockbar • 0

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856

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AnnotationHubSoftware ensembldb

updated 8 months ago by James W. MacDonald 65k • written 8 months ago by cjag • 0

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4.3k

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biomaRt ensembldb UniProt.ws

updated 7 months ago by Marcel Ramos 700 • written 21 months ago by Recep ▴ 20

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1.4k

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ensembldb

updated 9 months ago by James W. MacDonald 65k • written 9 months ago by Max ▴ 10

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505

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Rsubread ensembldb

updated 9 months ago by James W. MacDonald 65k • written 9 months ago by Ya • 0

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1.6k

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ensembldb biomaRt

updated 10 months ago by Michael Love 42k • written 10 months ago by Benjamin ▴ 30

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2.7k

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ensembldb SNP SNPData genomes

written 2.2 years ago by Weiqiong • 0

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6.0k

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Ensembl Rstudio ensembldb AnnotationHub ensdb

updated 9 weeks ago by shepherl 3.9k • written 2.3 years ago by jon.klonowski ▴ 40

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986

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Annotation biomaRt ensembldb

written 2.5 years ago by Lillian • 0

18 results • Page 1 of 1

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Answer: Numerical differences in DESeq2 output depending on different design matrix cons by Michael Love 42k

Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.

Answer: DESeq2- Mysterious interaction suppresses DEGs by Michael Love 42k

Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…

Comment: Ensembl plants at annotationHub? by Daniele • 0

Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!

Comment: Numerical differences in DESeq2 output depending on different design matrix cons by swbarnes2 ★ 1.4k

If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?

Comment: DESeq2- Mysterious interaction suppresses DEGs by shaunpeterson • 0

The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…

Votes

Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")

Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa

Rsubread counting peaks ATACseq

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