Showing : Rstudio • reset
0
votes
8
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380
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DESeq2 output used for PCA plot on R studio
DESeq2 RSTUDIO PCAtools
updated 22 days ago by ★ 1.4k • written 23 days ago by • 0
0
votes
0
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248
views
RN to EC Mapping Not Working for Some Nodes
RStudio ggkegg
updated 4 months ago by 65k • written 4 months ago by • 0
2
votes
3
replies
520
views
NCBI protein to NCBI cDNA (Ensembl conversions would be great as well) in R
Rstudio cDNA ensembldb NCBI
5 months ago R_Page • 0
0
votes
2
replies
401
views
Help Subsetting DDS for plotPCA for contrast groups
Rstudio plotPCA DESeq2
5 months ago yee • 0
1
vote
3
replies
475
views
Pan-organism OrgDb database, Accession number translated to organism name in R
AccNo OrgDb convert Organismname RStudio
updated 6 months ago by 65k • written 6 months ago by • 0
2
votes
5
replies
840
views
Conversion between different types of bioinformatic forms. (eg. NCBI protein to Ensembl protein) in R
RStudio convert ensembldb NCBI
6 months ago j_denton • 0
0
votes
7
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1.7k
views
Graphics API Version Mismatch Error with DESeq2 and ggplot2 in RStudio on Ubuntu 22.04
error RStudio ggplot2 DESeq2
updated 6 months ago by 65k • written 6 months ago by • 0
0
votes
1
reply
392
views
FALSE error when checking a pre made sample data
Rstudio scRNAseq DESeq2
updated 9 months ago by ★ 4.1k • written 9 months ago by • 0
0
votes
1
reply
1.1k
views
DESeq2 error after installing BiocManager
scRNAseq RStudio DESeq2
updated 9 months ago by ★ 4.1k • written 9 months ago by • 0
0
votes
2
replies
1.2k
views
Usinig BiocParallel package in R with M1 MAC
RStudio R M1 BiocParallel Mac
updated 16 months ago by • 0 • written 18 months ago by • 0
0
votes
1
reply
843
views
Bug: MOFA2 sets an environment variable that breaks knit in RStudio
RStudio MOFA2 bug knitr
updated 18 months ago by 65k • written 18 months ago by ▴ 430
0
votes
1
reply
775
views
Issue with installation of a package.
RStudio flowFDA
updated 19 months ago by ▴ 780 • written 19 months ago by • 0
0
votes
14
replies
4.1k
views
GenomeInfoDbData had non-zero exit status
DESeq2 RStudio GenomeInfoDbData hadnon-zeroexitstatus
updated 19 months ago by • 0 • written 22 months ago by • 0
4
votes
5
replies
2.1k
views
DESeq2::plotPCA plotting error
RStudio PCA DESeq2
written 2.1 years ago by • 0
0
votes
0
replies
1.2k
views
function GDCquery_Maf error
rstudio maftools
2.1 years ago misslubblys • 0
9
votes
11
replies
5.9k
views
Where can I find EnsDb.Hsapiens.v105?
Ensembl Rstudio ensembldb AnnotationHub ensdb
updated 9 weeks ago by 3.9k • written 2.3 years ago by ▴ 40
0
votes
3
replies
1.5k
views
Reading large file (15GB) in R
R Rstudio Bioconducter statistics
updated 2.2 years ago by 21k • written 2.3 years ago by ▴ 10
0
votes
0
replies
645
views
Read the first sequence from fasta file - TFBSTool
TFBSTools FASTA RStudio
2.5 years ago HELEN • 0
0
votes
1
reply
777
views
TFBSTools and readFASTA
TFBSTools DNASeqData readFASTA DNA RStudio
updated 2.5 years ago by 65k • written 2.5 years ago by • 0
0
votes
0
replies
628
views
TFBSTools- analysis for trascriprion factors
TFBSTools RStudio R
2.6 years ago HELEN • 0
1
vote
5
replies
2.2k
views
DESeq2: All samples have 0 counts for all genes. check the counting script
DESeq2 RStudio
2.6 years ago Sonia • 0
0
votes
1
reply
2.2k
views
Unable to Install packages in R
rstudio
updated 2.7 years ago by 65k • written 2.7 years ago by • 0
0
votes
4
replies
3.1k
views
transformation of csv file to fasta format with biostrings and r studio
DNASeq rstudio fasta Biostrings csv
2.7 years ago HELEN • 0
5
votes
15
replies
11k
views
Can't able to install Seurat in Rstudio
Rstudio Seurat
updated 3.0 years ago by ★ 3.9k • written 3.0 years ago by • 0
1
vote
7
replies
2.9k
views
Error with hclust
dendrogram hclust textanalysis R RStudio
3.1 years ago Abby ▴ 10
0
votes
1
reply
853
views
Defining groups in Decipher by sequence position in the database (FASTA)
DefiningGroups RStudio DECIPHER Specificprimers
updated 3.2 years ago by ▴ 150 • written 3.2 years ago by • 0
1
vote
5
replies
4.1k
views
RStudio vs R: using rtracklayer to import bigwig files from http works in R but not in RStudio.
import.bw rtracklayer http RStudio
updated 3.5 years ago by ★ 11k • written 3.5 years ago by • 0
0
votes
1
reply
942
views
AnnotationHub display() gives JavaScript Alert and DataTables warning
AnnotationHub Shiny Rstudio
updated 4.2 years ago by 3.9k • written 4.2 years ago by • 0
0
votes
5
replies
1.5k
views
readTranscriptFeatures from genomation
R Rstudio Error readTranscriptFeatures genomation
updated 4.5 years ago by ▴ 20 • written 4.5 years ago by • 0
2
votes
1
reply
8.5k
views
Error: status was 'SSL connect error'
bioconductor proxy macOS R RStudio
updated 4.6 years ago by 25k • written 4.6 years ago by ▴ 20
0
votes
5
replies
1.7k
views
Using RStudio AMI with localhost
RStudio AWS AMI
4.8 years ago bio-explorer • 0
3
votes
6
replies
1.9k
views
Integer overflow issue with ChIPQC
ChIPQC Rstudio
updated 4.8 years ago by 25k • written 4.8 years ago by ▴ 30
1
vote
8
replies
2.7k
views
DESeq2/SummarizedExperiment RStudio shows Object With Null Pointer
deseq2 null summarizedexperiment rstudio
updated 4.9 years ago by 25k • written 4.9 years ago by • 0
0
votes
0
replies
1.8k
views
Error in contrasts<-(tmp, value = contr.funs[1 + isOF[nn]]) : contrasts can be applied only to factors with 2 or more levels
software error ballgown rstudio R stattest
5.1 years ago fatimarasool135 • 0
2
votes
4
replies
1.7k
views
make TxDb from list of genes
R maketxdbfrombiomart maketxdbfromgranges rstudio ensembl
updated 13 months ago by ▴ 10 • written 5.4 years ago by • 0
0
votes
4
replies
1.6k
views
New computer won't install DESeq2
deseq2 rstudio install error
updated 5.6 years ago by 42k • written 5.6 years ago by • 0
2
votes
2
replies
3.9k
views
ColSideColors set by rows for heatmap.2 in RStudio
rstudio heatmap.2
updated 5.8 years ago by 65k • written 5.8 years ago by • 0
0
votes
1
reply
1.3k
views
Install Bioconductor package locally/temporarily
R rstudio package installation
updated 5.8 years ago by 25k • written 5.8 years ago by ▴ 20
0
votes
1
reply
1.9k
views
DeSeq2 installation on ubuntu fails
deseq2 R ubuntu bioconductor rstudio
updated 5.8 years ago by 42k • written 5.8 years ago by • 0
0
votes
0
replies
1.1k
views
Running ASpli on R results in "Error: vector memory exhausted (limit reached?)"
aspli rstudio
5.9 years ago arphatak • 0
1
vote
4
replies
1.7k
views
biomaRt scan error for latest assembly when indicating version Number
biomart rstudio ensembl mart
updated 6.2 years ago by ★ 6.5k • written 6.2 years ago by • 0
2
votes
4
replies
1.3k
views
R session terminates when trying to load affycoretools package
affycoretools Rstudio fatal error
updated 6.2 years ago by 65k • written 6.2 years ago by ▴ 10
0
votes
2
replies
3.6k
views
Error in file.choose() : file choice cancelled
package development bioconductor rstudio rmarkdown vignettes
6.5 years ago clarisbaby • 0
1
vote
2
replies
1.3k
views
Rstudio session aborts when using read.celfiles()
oligo package Rstudio fatal error microarray CEL
6.5 years ago biostR ▴ 10
0
votes
0
replies
1.6k
views
Problem with heatmap by ComplexHeatmap
complexheatmap Rstudio NOISeq
6.7 years ago Luiz • 0
0
votes
1
reply
1.9k
views
Trouble installing Bioconductor in R-studio (R version 3.3.1)
bioconductor rstudio
updated 6.8 years ago by 25k • written 6.8 years ago by • 0
1
vote
1
reply
4.9k
views
MA plot in R
rstudio r plotMA
6.9 years ago g.k • 0
0
votes
3
replies
2.6k
views
error installing cummeRbund in R studio (Windows desktop)
Rstudio cummerbund error
6.9 years ago mszskb • 0
0
votes
4
replies
1.5k
views
problem in installing flowclust
rstudio flowclust
updated 6.9 years ago by 3.9k • written 7.0 years ago by • 0
0
votes
1
reply
1.2k
views
can a function outliers be applied for a flowframe?
bioconductor flow cytometry rstudio
updated 6.9 years ago by ▴ 350 • written 7.0 years ago by • 0
50 results • Page 1 of 1
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Comment: Ensembl plants at annotationHub? by Johannes Rainer ★ 2.0k
Dear Daniele, for which Ensembl release would you need the data? the most recent is 112, but if you used a different version before it wou…
Comment: Ensembl plants at annotationHub? by Daniele • 0
Dear Johannes, Would it be possible to create the EnsDb for Triticum aestivum (IWGSC)? Thank you very much, Daniele
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools by BioinfGuru ▴ 30
Figured it out with ?eigencorplot, thanks Michael. I was trying to pass 10 PCs when I only had 8, and I was including metadata columns that…
Answer: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set by makala • 0
Thanks a lot!
Comment: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set by Erik Wright ▴ 150
Thanks for notifying us of this broken link. It should be fixed on the Downloads page now. [1] [1]: http://www2.decipher.codes/Classificat…
Votes
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?
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