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fold change
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5
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Possible ways to select differential expressed genes using DeSeq2 or edgeR
R
deseq2
edger
differential gene expression
fold change
updated 2.0 years ago by
ATpoint
★ 4.1k • written 5.9 years ago by
Beginner
▴ 60
1
vote
2
replies
2.2k
views
diffBind report Fold scale
diffBind
Fold Change
updated 3.0 years ago by
Joe Nicholas
• 0 • written 5.3 years ago by
joseluis.ruiz
• 0
2
votes
4
replies
1.3k
views
Majority upregulated genes in edgeR
edger
differential expression
genes
fold change
updated 4.9 years ago by
Aaron Lun
★ 28k • written 4.9 years ago by
ilovesuperheroes1993
• 0
0
votes
0
replies
936
views
PROBLEM WITH MFUZZ
mfuzz
fold change
log2
STANDARDISATION
5.9 years ago
prakashpandey1111
• 0
1
vote
1
reply
1.4k
views
What is the exact formula for the calculation of Fold Change (FC), p-val and q-val in Ballgown stattest?
ballgown
stattest
fold change
updated 6.2 years ago by
James W. MacDonald
65k • written 6.2 years ago by
ag1805x
▴ 80
0
votes
1
reply
1.5k
views
Question on fold change calculation for microarray data
logfc
limma
fold change
updated 7.7 years ago by
Gordon Smyth
50k • written 7.7 years ago by
Claudia
▴ 10
2
votes
7
replies
2.4k
views
About differentially expressed genes that found by edgeR
edgeR
DE analysis
fold change
cpm
updated 7.8 years ago by
Ryan C. Thompson
★ 7.9k • written 7.8 years ago by
Sara
▴ 10
7 results • Page
1 of 1
Recent ...
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Comment: all variables in design formula must be columns in colData (Deseq2) error
by
Galina
• 0
thank you!
Comment: all variables in design formula must be columns in colData (Deseq2) error
by
ATpoint
★ 4.1k
coldata_rat <- data.frame(conditions=..., batch=...)
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
by
robersy
• 0
Thank you all for your comments. I will follow your suggestions.
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
Ken C
• 0
Hi Michael, thanks a lot for your prompt reply! Not sure if this is appropriate or if you are the right person to ask -- is there anything…
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
Ken C
• 0
Well, if I look at genes with baseMean>50, then the relative absolute difference in log2FoldChange (say over the absolute log2FoldChange of…
Votes
biomaRt not working - lazy table error
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
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