Showing : goseq • reset
2
votes
3
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306
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package goseq seems to be not available on the latest version of R
goseq
updated 18 days ago by 50k • written 21 days ago by ▴ 20
1
vote
2
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285
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supportedOrganisms() in goseq producing Error in names(trackIds)
goseq Bioconductor rtracklayer
11 weeks ago thomas • 0
1
vote
4
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473
views
goseq, warning and strange plot from nullp
goseq
3 months ago boczniak767 ▴ 720
0
votes
1
reply
617
views
Downstream analysis with Differentially Expressed Genes
DESeq2 GO goseq FunctionalAnnotation
updated 18 months ago by ▴ 10 • written 18 months ago by • 0
0
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5
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2.1k
views
GO enrichment with non-model organism, supplying GO mappings
clusterProfiler goseq topGO DESeq2
updated 24 months ago by 66k • written 24 months ago by ▴ 10
0
votes
2
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853
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goseq: Wallenius Vs Fisher's Noncentral Hypergeometric Distribution
goseq
2.1 years ago Steve Pederson ▴ 170
1
vote
2
replies
842
views
Pathway analysis of RNAseq data using goseq package
Pathways goseq RNASeqData
2.2 years ago m.glymenaki • 0
0
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0
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766
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Gage pathway analysis of RNAseq graphical representation as dot plot
gage plot RNASeq goseq
updated 2.2 years ago by 42k • written 2.2 years ago by • 0
1
vote
10
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2.5k
views
How to run Goseq for list of ensembl gene IDs
goseq
3.2 years ago • updated 3.1 years ago Lucky • 0
1
vote
4
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1.5k
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goseq package loading issues
DESeq2 goseq
3.2 years ago avinashi • 0
3
votes
9
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1.9k
views
Warning message when performing Gene Ontology analysis with goseq using hg38
goseq
updated 3.3 years ago by 66k • written 3.3 years ago by • 0
2
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3
replies
1.7k
views
Gene Ontology Analysis of DE Genes
clusterProfiler AnnotationDbi OrgDb goseq
updated 3.3 years ago by 66k • written 3.3 years ago by ▴ 30
2
votes
2
replies
1.2k
views
Pathway analysis and GO terms analysis with goseq
KEGG Pathways GO goseq
updated 3.5 years ago by 66k • written 3.5 years ago by • 0
0
votes
1
reply
938
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non-native GO annotation cannot be successfully introduced into Goseq
goseq rnaseq r
updated 3.6 years ago by 66k • written 3.6 years ago by • 0
1
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2
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906
views
GOSeq analysis in rice
goseq
3.9 years ago • updated 3.8 years ago Jitendra ▴ 10
0
votes
2
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728
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Goseq_analysis related help
goseq
3.9 years ago kumararya563 • 0
0
votes
0
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488
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go seq related help, where I need to do mapping between go term and the protein -id
goseq
3.9 years ago kumararya563 • 0
3
votes
2
replies
1.1k
views
Goseq analysis related help.
annotation goseq
updated 4.0 years ago by ★ 13k • written 4.0 years ago by • 0
0
votes
0
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842
views
How to identify differentially expressed genes from Reactome pathways enriched according to GOseq?
goseq go rna-seq
4.1 years ago hasse.bossenbroek • 0
4
votes
5
replies
1.8k
views
Downgrading R to 3.6.0 version (GOseq problem)
goseq installation
4.4 years ago gdalsky ▴ 40
0
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1
reply
2.2k
views
GO enrichment analysis graphs after goseq: any easy solutions?
go enrichment gene ontology goseq go
4.7 years ago Raito92 ▴ 60
2
votes
6
replies
1.1k
views
Can't install GOSEQ (dependency problem) on CentOS 7!
goseq r package r
updated 4.7 years ago by ★ 6.5k • written 4.7 years ago by ▴ 60
1
vote
1
reply
1.3k
views
GOseq analysis with only upregulated or downregulated genes
goseq
updated 5.1 years ago by ▴ 310 • written 5.1 years ago by ▴ 160
2
votes
2
replies
1.1k
views
Using GOseq for custom gene set enrichment test
goseq
updated 5.3 years ago by 50k • written 5.3 years ago by • 0
2
votes
2
replies
2.9k
views
How to access gene IDs associated with GO terms in GOSeq
GOseq ensemblid GO
updated 5.5 years ago by 66k • written 5.5 years ago by • 0
4
votes
10
replies
3.1k
views
Question: GoSeq: opposite pwf plot for up- and downregulated genes
goseq
8.6 years ago • updated 5.6 years ago Jakub ▴ 50
1
vote
3
replies
1.9k
views
goseq: Formatting category list for use with goseq
goseq category test
updated 5.7 years ago by 66k • written 5.7 years ago by ▴ 40
0
votes
0
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887
views
how to: enrichment (over representation) analysis of GWAS/QTL data distributed over a genome with GOSEQ
goseq enrichment GWAS
5.8 years ago zhu • 0
0
votes
1
reply
1.2k
views
GOseq output but strange warning message!
GOseq GO pwf goseq
5.8 years ago TB18 • 0
1
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1
reply
1.2k
views
Goseq output with too many GO terms per category
go goseq goterm category
updated 5.8 years ago by 50k • written 5.8 years ago by • 0
3
votes
2
replies
1.1k
views
numInCat in goseq inconsistent with value obtained from org.Hs.eg.db
goseq
updated 5.8 years ago by 66k • written 5.8 years ago by • 0
1
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9
replies
2.2k
views
Using goseq with unsupported organism
goseq
updated 5.9 years ago by 66k • written 5.9 years ago by • 0
0
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0
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948
views
GOseq No Underrepresented Categories
goseq go enrichment
5.9 years ago mart1139 • 0
8
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10
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1.6k
views
Genes listed in GO categories
goseq biomart
updated 5.9 years ago by 50k • written 6.0 years ago by • 0
0
votes
2
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895
views
goseq with hypergeometric method
goseq
updated 6.0 years ago by 50k • written 6.0 years ago by ▴ 40
0
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0
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1.3k
views
I finally solved my problem with installing "org.Hs.eg.db"!
goseq org.hs.eg.db
6.1 years ago nancyjwahl7 • 0
2
votes
6
replies
2.0k
views
Can Tximport average transcript length be used for GOSeq?
deseq2 tximport goseq
6.2 years ago casey.rimland ▴ 150
0
votes
6
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1.4k
views
How to link methylation code from UCSC (hg19-cg07790169) to ENSEMBL genome code (goseq procedure)
goseq methylation ensembl ucsc limma
6.3 years ago • updated 6.2 years ago dusan.petrovic • 0
0
votes
2
replies
3.7k
views
DESeq2 followed by goseq GO-analysis: Extracting DE genes of enriched GO category
deseq2 goseq rnaseq go enrichment differential gene expression
updated 6.3 years ago by 42k • written 6.3 years ago by • 0
0
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3
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1.2k
views
What is the impact of using GOSeq to voom-adjusted RNA-seq Expressions ?
limma limma-voom goseq
updated 6.3 years ago by 50k • written 6.3 years ago by • 0
0
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1
reply
2.6k
views
installation of package 'goseq' had non-zero exit status
goseq installation
updated 6.5 years ago by 25k • written 6.5 years ago by • 0
0
votes
1
reply
1.7k
views
PANTHER.db- external pointer error
goseq pantherdb pathway analysis gene ontology
updated 6.5 years ago by 66k • written 6.5 years ago by ▴ 10
1
vote
2
replies
2.9k
views
GOseq: Determining ENSG IDs Associated with Genes Summarized by `numDEInCat` for Each Ontology Term
goseq gene ontology
updated 6.6 years ago by 66k • written 6.6 years ago by • 0
0
votes
1
reply
1.2k
views
Error: subscript out of bounds when using ucscGenomes() and supportedGenomes() functions in goseq and rtracklayer packages respctively
goseq rtracklayer
6.6 years ago mgdrnl • 0
2
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3
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1.8k
views
GOseq error on running nullp
goseq GO term
updated 6.6 years ago by 50k • written 6.6 years ago by • 0
0
votes
1
reply
2.0k
views
GO.db won't install for using goseq package
GO.db goseq package installation error
updated 6.7 years ago by 25k • written 6.7 years ago by • 0
0
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2
replies
1.6k
views
bias.data vector must have the same length as DEgenes vector!
edger goseq
updated 6.7 years ago by ★ 28k • written 6.7 years ago by ▴ 10
0
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0
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1.3k
views
gene length file for GOseq
goseq
6.7 years ago mictadlo ▴ 10
2
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2
replies
1.4k
views
Error in normSplitFactor(f, x)
GenomicRanges rtracklayer goseq
updated 6.7 years ago by ★ 11k • written 6.7 years ago by ▴ 10
0
votes
3
replies
1.6k
views
goseq after edgeR
edger goseq
updated 6.7 years ago by ★ 28k • written 6.7 years ago by ▴ 10
50 results • Page 1 of 1
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Comment: Volcano plot of scRNA-seq data not "centered" by tjl • 0
Thank you both. The code is below, simplified a bit for simplicity. ATpoint, your suggestion re: the top 20% of genes by baseMean makes me …
Comment: Cannot install oligo on Fedora by James W. MacDonald 66k
Wait a minute. The `oligo` package is *supposed to* be using `zlibbioc`, but apparently it is not. I get the same thing as you do, where it…
Comment: Cannot install oligo on Fedora by James W. MacDonald 66k
There is the `zlibbioc` package that provides the headers for zlib 1.2.5, that I think you should be able to use, although that would requi…
Answer: GSVA function by Robert Castelo ★ 3.3k
Hi, We recommend to input normalized expression values in logarithmic scale to GSVA. We also recommend to use the latest release of the …
Comment: Cannot install oligo on Fedora by Guido Hooiveld ★ 4.0k
Aha, that is a good one! Starting from release 40, as I just found out, Fedora apparently is not including/using `zlib` as such anymore, b…
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Answer: How to run allelic imbalance in apeglm
Answer: Not able to install any Bioconductor 3.18 package [unable to access index]
Answer: Documenting resources in an `ExperimentHub` package?
Answer: Not able to install any Bioconductor 3.18 package [unable to access index]
Seurat/DESeq2 - single cell RNA-seq differential expression
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