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Defining BSgenome -> GRanges S4 coercer without package attaching
BSgenome
methods
GenomicRanges
4.7 years ago
Aditya
▴ 160
0
votes
1
reply
787
views
Why does S4Vectors define three functions for Vector -> data.frame coercion
S4Vectors
methods
4.7 years ago
Aditya
▴ 160
2
votes
2
replies
1.1k
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SetMethod to dispatch on class in unattached package
s4
methods
SummarizedExperiment
updated 5.3 years ago by
Aaron Lun
★ 28k • written 5.3 years ago by
brendan.innes
▴ 20
0
votes
3
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1.1k
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How to clear a cached S4 method
devtools
S4
methods
cache
5.5 years ago
Michael Steinbaugh
▴ 90
0
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0
replies
916
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Deconvolute bulk RNA-Seq from human epithelial tissue scrapings with immune/blood cell contamination
deconvolution
methods
6.3 years ago
casey.rimland
▴ 150
5 results • Page
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Answer: Errors in chromosome annotation-biomaRt
by
James W. MacDonald
65k
If you are just using HGNC symbols for the lookup, and you are trying to get NCBI IDs, then I wouldn't use `biomaRt` because it's based on …
Comment: Help with ENmix readidat
by
James W. MacDonald
65k
Please don't add to posts from two years ago. Instead make a new post. Also, please read the help page for `readidat`. The only reason to …
Comment: LRT, more than two conditions and pairwise comparisons
by
James W. MacDonald
65k
In that case, probably easiest to subset to the groups being compared.
Comment: Help with ENmix readidat
by
minardsmitha
▴ 10
Did you figure this out? I have the same issue.
Comment: LRT, more than two conditions and pairwise comparisons
by
boczniak767
▴ 720
Thank you for response, apparently I still don't know much about statistics. In fact I want to campare time-profiles [and the LRT has been …
Votes
Comment: DESeq2- Mysterious interaction suppresses DEGs
Answer: DESeq2- Mysterious interaction suppresses DEGs
Answer: Subsetting RNAseq data | voomaByGroup()
biomaRt not working - lazy table error
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
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