Showing : methyAnalysis • reset
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Diffrential Gene expression in a group of specific methylated prometor patience
GeneExpression methyAnalysis MethylationArray
3.5 years ago coobzie • 0
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Methylation data visualization using methyAnalysis with minfi
methylation microarray illumina minfi methyanalysis
updated 5.4 years ago by ★ 1.3k • written 5.4 years ago by • 0
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methyAnalysis - library(methyAnalysis) hangs when talking to Internet
methyanalysis
6.3 years ago mcahn • 0
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Problem in installing Bioconductor packages due to "IRanges"
lumi methylumi methyAnalysis
6.4 years ago topijush ▴ 10
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Recurring error in smoothMethygenoset step for MethyAnalysis
methyanalysis
6.5 years ago charleneee95 • 0
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strange results from differential methylation analysis using limma
limma methylation methyanalysis IMA
updated 2.0 years ago by 21k • written 7.2 years ago by • 0
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methyAnalysis: heatmapByChromosome not works
methyAnalysis
7.6 years ago Shicheng Guo • 0
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937
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problem with identifySigDMR command
methyAnalysis
7.8 years ago yuping.zhang • 0
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methyAnalysis error with example data
methyanalysis
8.0 years ago Tom ▴ 10
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10
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4.5k
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Illumina MethylationEPIC vs. 450K
methylumi minfi illuminahumanmethylation450k.db 450k methyanalysis
updated 8.2 years ago by ▴ 740 • written 8.2 years ago by ▴ 50
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MethylAid package visualize function not opening a web browser
illimina 450k methylation methyanalysis methylaid
8.6 years ago jdangelo • 0
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4.2k
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methyAnalysis M values and Beta Values
methyAnalysis methyanalysis 450k
updated 9.2 years ago by ▴ 80 • written 9.2 years ago by ▴ 370
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1.3k
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Understanding methyAnalysis Results
methyAnalysis methyanalysis methylation illuminahumanmethylation450k.db
updated 9.2 years ago by ▴ 80 • written 9.2 years ago by ▴ 370
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DMR identification: minfi speed, memory problems
Annotation convert minfi methyAnalysis bumphunter Annotation convert minfi methyAnalysis
10.2 years ago Allegra Petti ▴ 120
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2.3k
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methyAnalysis for DMR identification
convert methyAnalysis convert methyAnalysis
updated 10.2 years ago by ▴ 160 • written 10.2 years ago by ★ 13k
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6
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3.0k
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DMR identification: minfi speed, memory problems
Annotation convert minfi methyAnalysis bumphunter Annotation convert minfi methyAnalysis
updated 10.2 years ago by 65k • written 10.2 years ago by ★ 13k
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Conversion of minfi format MethylSet to methyAnalysis format MethyGenoSet
Cancer charm minfi methyAnalysis Cancer charm minfi methyAnalysis
11.2 years ago Ed Schwalbe ▴ 20
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genoset:::initGenoSet
methyAnalysis methyAnalysis
updated 11.2 years ago by ▴ 440 • written 11.2 years ago by ▴ 20
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1.7k
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Loading Data into MethyAnalysis
Microarray methyAnalysis Microarray methyAnalysis
updated 11.3 years ago by ▴ 440 • written 11.3 years ago by ★ 13k
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methyAnalysis methyGenoSet function
methyAnalysis methyAnalysis
updated 11.3 years ago by 21k • written 11.4 years ago by ▴ 10
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1.2k
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importing data problem with methyAnalysis package
Biophysics Annotation Preprocessing annotate lumi methyAnalysis Biophysics Annotation lumi
11.4 years ago Pan Du ▴ 440
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Comment: all variables in design formula must be columns in colData (Deseq2) error by Galina • 0
thank you!
Comment: all variables in design formula must be columns in colData (Deseq2) error by ATpoint ★ 4.1k
coldata_rat <- data.frame(conditions=..., batch=...)
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by robersy • 0
Thank you all for your comments. I will follow your suggestions.
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by Ken C • 0
Hi Michael, thanks a lot for your prompt reply! Not sure if this is appropriate or if you are the right person to ask -- is there anything…
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by Ken C • 0
Well, if I look at genes with baseMean>50, then the relative absolute difference in log2FoldChange (say over the absolute log2FoldChange of…
Votes
biomaRt not working - lazy table error
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
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