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methylKit
•
reset
0
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2
replies
1.7k
views
error reading bismark sam/bam files
methylKit
6.9 years ago
kamal.fartiyal84
▴ 10
0
votes
4
replies
1.6k
views
load methylKit segfault error
methylKit
bioconductor
updated 7.7 years ago by
Martin Morgan
25k • written 7.7 years ago by
tangming2005
▴ 190
0
votes
3
replies
1.6k
views
How to install MethylKit?
methylkit
Tutorial
updated 6.5 years ago by
Martin Morgan
25k • written 6.5 years ago by
s1432985
• 0
0
votes
2
replies
1.2k
views
MethylKit DSS Package
R
bioconductor
methylation
methylkit
updated 5.8 years ago by
altuna akalin
▴ 20 • written 5.8 years ago by
nilaycan
• 0
0
votes
2
replies
1.2k
views
normalizecoverage in methylkit outputs NAs
methylkit
normalizecoverage
NA
updated 5.6 years ago by
altuna akalin
▴ 20 • written 5.6 years ago by
GFM
▴ 20
0
votes
1
reply
1.2k
views
Methread error Error in data[, 5] * data[, 6] : non-numeric argument to binary operator
methylkit
updated 2.6 years ago by
alex.gos90
▴ 10 • written 2.9 years ago by
hasche
• 0
0
votes
6
replies
1.5k
views
Error: duplicate row.names
GenomicRanges
methylKit
S4Vectors
updated 2.2 years ago by
James W. MacDonald
65k • written 2.2 years ago by
hasche
• 0
0
votes
1
reply
1.1k
views
Gene level methylation values
methylation
methylKit
bsseq
updated 2.6 years ago by
alex.gos90
▴ 10 • written 2.9 years ago by
ag1805x
▴ 80
2
votes
1
reply
1.2k
views
Not able to Annotate CpG Island using methylKit
annotateWithGeneParts
methylKit
2.7 years ago
tanmayroy1979
▴ 20
1
vote
2
replies
259
views
MethylKit read issue
methylKit
updated 6 weeks ago by
James W. MacDonald
65k • written 7 weeks ago by
CHEN
• 0
0
votes
2
replies
1.7k
views
report error of methylkit
methylKit
updated 6.9 years ago by
altuna akalin
▴ 20 • written 6.9 years ago by
ch8316f5eyu
• 0
0
votes
0
replies
672
views
Generating 5mCG or 5hmCG values per gene from BS/OXBS data
methyl
methylKit
2.1 years ago
hasche
• 0
0
votes
1
reply
598
views
[Methylkit]-Error in validObject(.Object) :
methRead
methylkit
17 months ago
liulip
• 0
0
votes
1
reply
146
views
Granges regionCounts not returning the expected number of entries
methylKit
6 weeks ago
Modoc Kesner
▴ 10
0
votes
0
replies
470
views
MethylKit::calculateDiffMeth with two experimental factors
methylKit
9 months ago
Andrés
• 0
15 results • Page
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Answer: ERROR; return code from pthread_create() is 22
by
James W. MacDonald
65k
Seems OK to me. ``` > dat <- ReadAffy() > dat AffyBatch object size of arrays=744x744 features (20 kb) cdf=HG-U219 (49386 affyids) …
Answer: LRT, more than two conditions and pairwise comparisons
by
James W. MacDonald
65k
Unless you think the different lines or tissues will have very different within-group variances, you should just analyze together and make …
Answer: How to remove batch effect to combine RNAseq data from 2 different experiments?
by
James W. MacDonald
65k
It appears that batch is orthogonal to the treatment, so you can just fit a batch effect in your model.
Answer: Control group between 2 batches have different expression in RNAseq data
by
James W. MacDonald
65k
Since batch is orthogonal to the treatment, you just add a batch factor to your model.
Answer: Subsetting RNAseq data | voomaByGroup()
by
Anna
• 0
Hi Gordon. Thank you so much. Your reply is extremely helpful, and I feel more confident moving forward with the analysis. Also, very inte…
Votes
Answer: Subsetting RNAseq data | voomaByGroup()
biomaRt not working - lazy table error
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
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