Bioconductor MethylKit

Showing : methylKit • reset

votes

146

views

methylKit

6 weeks ago Modoc Kesner ▴ 10

vote

replies

260

views

methylKit

updated 6 weeks ago by James W. MacDonald 65k • written 7 weeks ago by CHEN • 0

votes

replies

471

views

methylKit

9 months ago Andrés • 0

votes

598

views

methRead methylkit

17 months ago liulip • 0

votes

replies

673

views

methyl methylKit

2.1 years ago hasche • 0

votes

replies

1.5k

views

GenomicRanges methylKit S4Vectors

updated 2.2 years ago by James W. MacDonald 65k • written 2.2 years ago by hasche • 0

votes

1.2k

views

annotateWithGeneParts methylKit

2.7 years ago tanmayroy1979 ▴ 20

votes

1.1k

views

methylation methylKit bsseq

updated 2.6 years ago by alex.gos90 ▴ 10 • written 2.9 years ago by ag1805x ▴ 80

votes

1.2k

views

methylkit

updated 2.6 years ago by alex.gos90 ▴ 10 • written 2.9 years ago by hasche • 0

votes

replies

1.2k

views

methylkit normalizecoverage NA

updated 5.6 years ago by altuna akalin ▴ 20 • written 5.6 years ago by GFM ▴ 20

votes

replies

1.2k

views

R bioconductor methylation methylkit

updated 5.8 years ago by altuna akalin ▴ 20 • written 5.8 years ago by nilaycan • 0

votes

replies

1.6k

views

methylkit Tutorial

updated 6.5 years ago by Martin Morgan 25k • written 6.5 years ago by s1432985 • 0

votes

replies

1.7k

views

methylKit

updated 6.9 years ago by altuna akalin ▴ 20 • written 6.9 years ago by ch8316f5eyu • 0

votes

replies

1.7k

views

methylKit

6.9 years ago kamal.fartiyal84 ▴ 10

votes

replies

1.6k

views

methylKit bioconductor

updated 7.7 years ago by Martin Morgan 25k • written 7.7 years ago by tangming2005 ▴ 190

15 results • Page 1 of 1

Recent ...

Replies

Comment: DESeq2- Mysterious interaction suppresses DEGs by Michael Love 42k

We have some text about this particular question in the Frequently Asked Questions (FAQ) part of the software vignette.

Answer: How to run allelic imbalance in apeglm by Michael Love 42k

You can put 1 / 1 for the ratio when you are missing counts and then set the weight for that matrix cell to 1e-6. Let me know if that's …

Comment: Numerical differences in DESeq2 output depending on different design matrix cons by Ken C • 0

Got you. Thanks again for your comments.

Comment: DESeq2- Mysterious interaction suppresses DEGs by shaunpeterson • 0

Thanks so much for your comment. Yes, this makes sense to me, especially since the effect of the drug is subtle. But it raises a larger con…

Answer: ERROR; return code from pthread_create() is 22 by James W. MacDonald 65k

Seems OK to me. ``` > dat <- ReadAffy() > dat AffyBatch object size of arrays=744x744 features (20 kb) cdf=HG-U219 (49386 affyids) …

Votes

Comment: DESeq2- Mysterious interaction suppresses DEGs

Answer: DESeq2- Mysterious interaction suppresses DEGs

Answer: Subsetting RNAseq data | voomaByGroup()

biomaRt not working - lazy table error

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Awards • All