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minfi minfiDataEPIC

updated 16 days ago by James W. MacDonald 66k • written 16 days ago by e1271094 • 0

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updated 29 days ago by Basti ▴ 780 • written 4 weeks ago by clacarion • 0

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updated 24 days ago by James W. MacDonald 66k • written 7 weeks ago by clacarion • 0

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Comment: Volcano plot of scRNA-seq data not "centered" by Michael Love 42k

Agree with @atpoint Depending on the "groups" in single cell, the question of DE can be not well defined without inserting additional inf…

Answer: Volcano plot of scRNA-seq data not "centered" by ATpoint ★ 4.2k

Sounds like a normalization problem, but I am not sure how to help with that. Indeed you can use control genes, for example use the top 20%…

Comment: Using featureCounts with SAF annotation file gives "Error: only GTF files contai by ATpoint ★ 4.2k

I was talking about the command line version.

Comment: Using featureCounts with SAF annotation file gives "Error: only GTF files contai by atan • 0

I tried reading in the .csv version of the SAF with header = F and I'm still getting an error. I'm running: ``` counts <- featureCounts( …

Comment: Using the plotting functions of clusterProfiler / enrichplot with enrichment res by jovel_juan ▴ 30

enrichPlot requirements are rather low. All what it needs is to provide few columns named specifically. I student of mine wrote the first v…

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Error when converting Seurat to SingleCellExperiment

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