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missing data
•
reset
1
vote
3
replies
1.5k
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Missing Clinical LIHC Data
Missing Data
TCGAbiolinks
Kaplan-Meier
LIHC
Xenabrowser
4.5 years ago
jam526
• 0
0
votes
4
replies
2.8k
views
how to handle missing data for SampleTable in DESeq2
deseq2
sample_table
missing data
updated 5.3 years ago by
g.wang2
• 0 • written 9.1 years ago by
anpham
▴ 60
0
votes
1
reply
1.3k
views
DESeq2 paired design with missing samples and multiple conditions
deseq2
paired samples
missing data
multiple treatments
updated 5.5 years ago by
Michael Love
42k • written 5.5 years ago by
greg.deakin
• 0
0
votes
13
replies
2.4k
views
handling missing data (NA) for methylaion analysis in Limma
limma
missing data
methylation
normalization
updated 6.6 years ago by
Aaron Lun
★ 28k • written 6.6 years ago by
mheydarpour
▴ 10
2
votes
5
replies
2.4k
views
Why does limma contrast.fit produces NA's for all contrast although missing data only in one condition?
limma
contrast
missing data
lmfit
makecontrasts
updated 6.7 years ago by
Gordon Smyth
50k • written 6.7 years ago by
wewolski
▴ 10
0
votes
0
replies
828
views
imputing data using pcaMethods with large amounts of missing data in rows
pcamethods
missing data
7.1 years ago
eli-sava
• 0
3
votes
5
replies
7.7k
views
Wgcna with missing values - error with calculation of bicor correlations in pickSoftThreshold and blockwiseModules
software error
rnaseq
wgcna
missing data
8.4 years ago • updated 8.0 years ago
dvillarlozano
▴ 10
0
votes
1
reply
1.0k
views
Web CellHTS2 data upload
cellhts2
upload
missing data
updated 8.3 years ago by
Joseph Barry
▴ 160 • written 8.3 years ago by
zmorehouse
• 0
1
vote
1
reply
1.0k
views
filter rows by missing values frequency
missing data
filter
updated 8.4 years ago by
James W. MacDonald
65k • written 8.4 years ago by
rgescudero
• 0
0
votes
0
replies
1.5k
views
Possible methodologies for missing value imputation of continuous variables in a data frame in R
missing data
missing value imputation
impute
MICE
bioconductor
8.6 years ago
svlachavas
▴ 830
0
votes
1
reply
1.5k
views
workflowInstall issues; missing Windows binary
software error
missing data
workflowinstall
9.0 years ago
anoll2
• 0
0
votes
0
replies
1.3k
views
baySeq missing data
bayseq
missing data
9.1 years ago
k.w.lau
• 0
12 results • Page
1 of 1
Recent ...
Replies
Answer: Subsetting RNAseq data | voomaByGroup()
by
Gordon Smyth
50k
Judging from your MDS plot, cell types 1 and 2 look radically different, so it would make perfect sense to analyse them separately. There's…
Answer: Numerical differences in DESeq2 output depending on different design matrix cons
by
Michael Love
42k
Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.
Answer: DESeq2- Mysterious interaction suppresses DEGs
by
Michael Love
42k
Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…
Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
swbarnes2
★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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