Showing : monocle • reset
1
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206
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Differentially expressed genes in monocle pseudotime
monocle
updated 4 weeks ago by 50k • written 4 weeks ago by • 0
0
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2
replies
356
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Singlecell protein surface (ADT) pseudotime techniques
monocle slingshot
7 months ago EspressoKris ▴ 10
0
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0
replies
467
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weighting sample group
monocle SingleCell DifferentialExpression
20 months ago Sogand • 0
1
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4
replies
2.1k
views
Trajectory analysis for single cell sequencing
single cell trajectory analysis tscan monocle
updated 3.8 years ago by ★ 28k • written 3.8 years ago by ▴ 40
0
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1
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2.9k
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How to customize the color in 'plot_cell_trajectory' function
scRNA seq monocle
updated 3.9 years ago by ★ 3.9k • written 3.9 years ago by • 0
0
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1
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2.4k
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Pseudotime analysis on bulk RNASeq using monocle
pseudotime monocle dimensionality
4.3 years ago pbachali ▴ 50
0
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1
reply
4.7k
views
monocle error at orderCells
scRNA monocle packages Tutorial
4.7 years ago 444579004 • 0
5
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3
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1.4k
views
Setting gene expression thresholds for trajectory analysis using Monocle
monocle differential gene expression detectgenes function Tutorial
5.3 years ago S.Webb6 ▴ 40
1
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1
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2.0k
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Mean Expression Calculation scRNA-seq (All cells or only Expressed Cells)
scrnaseq monocle
updated 6.0 years ago by ▴ 950 • written 6.0 years ago by ▴ 10
0
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1
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1.5k
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Converting scater-normalized UMI data to Monocle CellDataSet
scater scran umi monocle
updated 6.1 years ago by ★ 28k • written 6.1 years ago by • 0
0
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1
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1.7k
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monocle: Error in if (cds@expressionFamily@vfamily %in% c("negbinomial", "negbinomial.size"))
monocle
6.2 years ago Mehmet Ilyas Cosacak • 0
1
vote
5
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2.6k
views
Monocle causes R session to crash
software error monocle
updated 6.8 years ago by ▴ 350 • written 8.5 years ago by ▴ 10
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0
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1.5k
views
Documentation of "branch_states" and "branch_labels" arguments
monocle
6.8 years ago kevin.rue ▴ 350
0
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0
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2.6k
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Monocle plot_pseudotime_heatmap : Error in cutree(tree, cutree_n) : elements of 'k' must be between 1 and 3
R monocle
6.8 years ago A.H • 0
3
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1
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1.1k
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Normalizing vs RNA content in scRNAseq data
monocle scran
updated 6.8 years ago by ★ 28k • written 6.8 years ago by ▴ 40
0
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3
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1.3k
views
Batch effects and model matrices
deseq2 single cell monocle
updated 6.9 years ago by 42k • written 6.9 years ago by • 0
0
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0
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1.0k
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Basic Question: How to get appropriate pDATA structure in monocle from cufflinks/cuffnorm
cufflinks monocle
7.0 years ago alexandriapinto1 ▴ 10
0
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1
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1.1k
views
Monocle group sizes
monocle
7.1 years ago ribioinfo ▴ 100
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1
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3.5k
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error in monocle.
monocle
updated 7.2 years ago by • 0 • written 7.2 years ago by • 0
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0
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1.8k
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Monocle-strange differential expression results
monocle differential expression
8.4 years ago sunil.mangalam • 0
0
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0
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1.5k
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error: no slot of name "expressionFamily" for this object of class "CellDataSet"
monocle bugs
8.5 years ago wanghao1993333 • 0
1
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2
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1.7k
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Error message running DE-test in Monocle
monocle cummerbund DE rnaseq
updated 8.8 years ago by • 0 • written 9.1 years ago by ▴ 250
22 results • Page 1 of 1
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Replies
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db") by Patadù ▴ 10
Hi @marcelramos Thanks for the clarification. Yes, I have installed `org.Vdahlaie.eg.db` using the code you and Guido suggested and now i…
Comment: European Bioconductor Conference 2023 planning by angelaesper43 • 0
@Maria Doyle[sexdolltech][1]Hosting EuroBioC provides an excellent opportunity to showcase Bioconductor and computational biology research …
Comment: Ensembl plants at annotationHub? by Johannes Rainer ★ 2.0k
Dear Daniele, for which Ensembl release would you need the data? the most recent is 112, but if you used a different version before it wou…
Comment: Ensembl plants at annotationHub? by Daniele • 0
Dear Johannes, Would it be possible to create the EnsDb for Triticum aestivum (IWGSC)? Thank you very much, Daniele
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools by BioinfGuru ▴ 30
Figured it out with ?eigencorplot, thanks Michael. I was trying to pass 10 PCs when I only had 8, and I was including metadata columns that…
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
Awards • All
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Scholar to Michael Love 42k
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