Bioconductor Ncbi

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524

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Rstudio cDNA ensembldb NCBI

5 months ago R_Page • 0

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850

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RStudio convert ensembldb NCBI

6 months ago j_denton • 0

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645

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getGFF NCBI biomartr biomaRt

2.8 years ago Matan G. ▴ 60

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1.0k

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MakeOrgPackageFromNCBI NCBI SQL AnnotationForge

updated 4.0 years ago by James W. MacDonald 65k • written 4.0 years ago by chefer • 0

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1.3k

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ontology edger limma ncbi organism package

updated 4.2 years ago by Gordon Smyth 50k • written 4.2 years ago by babak.loghmani ▴ 20

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2.2k

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rsubread ncbi GRCh38 hg38

updated 7.5 years ago by Wei Shi ★ 3.6k • written 7.6 years ago by jan.soderman • 0

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1.4k

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ncbi sra search

8.3 years ago massacomgrao • 0

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3.5k

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ncbi refseq maketxdbfromgff fetchExtendedChromInfoFromUCSC genomeinfodb

updated 8.3 years ago by Hervé Pagès 16k • written 8.3 years ago by gokcen.eraslan ▴ 10

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3.3k

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microarray normalization ncbi

updated 9.0 years ago by James W. MacDonald 65k • written 9.0 years ago by pankajnarula84 ▴ 20

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1.3k

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annotate ncbi url

9.4 years ago reuma • 0

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Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by robersy • 0

Thank you all for your comments. I will follow your suggestions.

Comment: Numerical differences in DESeq2 output depending on different design matrix cons by Ken C • 0

Hi Michael, thanks a lot for your prompt reply! Not sure if this is appropriate or if you are the right person to ask -- is there anything…

Comment: Numerical differences in DESeq2 output depending on different design matrix cons by Ken C • 0

Well, if I look at genes with baseMean>50, then the relative absolute difference in log2FoldChange (say over the absolute log2FoldChange of…

Comment: all variables in design formula must be columns in colData (Deseq2) error by Galina • 0

Thank you for advice, you mean I need to add: countdata_rat <- data.frame(condition = as.factor(METADATA_RAT$treatment)) and total: dds_…

Answer: all variables in design formula must be columns in colData (Deseq2) error by ATpoint ★ 4.1k

Your code is poorly readable. Suggest you select and then highlight with markdown using the `10101` button. Generally, colData(dds) must…

Votes

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")

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