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Problems with Prostar v1.26.4 - issue with convert data prior to filtering
Prostar
2.3 years ago
benoit.marchand
• 0
1
vote
5
replies
1.1k
views
Need help for ProStaR Stand-alone install
Prostar
updated 24 months ago by
Wang
• 0 • written 2.5 years ago by
benoit.marchand
• 0
0
votes
0
replies
743
views
Extracting p-value table in Prostar
prostar
proteomics
5.9 years ago
laural710
• 0
1
vote
3
replies
1.4k
views
Running GO analysis via Prostar
prostar
proteomics
rforproteomics
annotationforge
updated 6.0 years ago by
Samuel Wieczorek
▴ 10 • written 6.0 years ago by
lolli.langan
▴ 20
0
votes
3
replies
1.2k
views
Prostar (query on GO analysis)
Prostar
Dapar
clusterprofiler
updated 6.1 years ago by
Samuel Wieczorek
▴ 10 • written 6.1 years ago by
laural710
• 0
0
votes
1
reply
1.0k
views
Prostar and DAPAR installation
install error
package installation
DAPAR
prostar
R version 3.4.4
6.1 years ago
rita.reig
• 0
0
votes
2
replies
1.4k
views
Query regarding Prostar
Prostar
updated 6.5 years ago by
Samuel Wieczorek
▴ 10 • written 7.6 years ago by
kamal.fartiyal84
▴ 10
0
votes
3
replies
1.4k
views
ProStaR Not working, gives error in code?
Prostar
DAPAR
software error
updated 6.5 years ago by
Samuel Wieczorek
▴ 10 • written 6.6 years ago by
van.theodorakis
• 0
8 results • Page
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Answer: Normalisation using clinical traits in RNA seq using DESeq2
by
ATpoint
★ 4.2k
See the vignette, it's a FAQ: https://bioconductor.org/packages/devel/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#why-after-vst-are-there-st…
Comment: More regions in union when increasing DBA$config$mergeOverlap
by
Ian D.
▴ 70
Please could you comment on this @rory
Comment: Using featureCounts with SAF annotation file gives "Error: only GTF files contai
by
Wei Shi
★ 3.6k
Your bam file names should be stored in a vector and then provided to the `files` parameter.
Comment: Volcano plot of scRNA-seq data not "centered"
by
Michael Love
42k
Agree with @atpoint Depending on the "groups" in single cell, the question of DE can be not well defined without inserting additional inf…
Answer: Volcano plot of scRNA-seq data not "centered"
by
ATpoint
★ 4.2k
Sounds like a normalization problem, but I am not sure how to help with that. Indeed you can use control genes, for example use the top 20%…
Votes
Answer: Not able to install any Bioconductor 3.18 package [unable to access index]
Answer: Documenting resources in an `ExperimentHub` package?
Answer: Not able to install any Bioconductor 3.18 package [unable to access index]
Seurat/DESeq2 - single cell RNA-seq differential expression
Seurat to SingleCellExperiment Converting error in MAC
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