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qvalue
•
reset
2
votes
5
replies
3.1k
views
How to use q.value cutt off in "decideTests" function for RNAseq differential expression analysis
rnaseq
decideTests
limma
qvalue
8.9 years ago
anver
• 0
1
vote
7
replies
1.7k
views
EDGE: Persistent lrt() and odp() command pi0est() error due to low p values
edge
qpcr
qvalue
7.2 years ago • updated 6.3 years ago
joe.d.moore.ii
• 0
1
vote
2
replies
1.2k
views
qvalues lower than pvalues
qvalue
6.9 years ago
AR3513
• 0
0
votes
4
replies
1.4k
views
observations on affyprobeminer
GO
rat2302
cdf
affy
qvalue
GO
rat2302
cdf
affy
qvalue
updated 16.0 years ago by
Hongfang Liu
▴ 10 • written 16.0 years ago by
Mark W Kimpel
▴ 830
0
votes
3
replies
3.8k
views
Running R without X11?
webbioc
qvalue
webbioc
qvalue
updated 15.7 years ago by
ALok
▴ 170 • written 15.7 years ago by
Amy Johnson
▴ 40
0
votes
4
replies
8.1k
views
DESeq adjusted pvalue calculation / filtering data
Sequencing
Organism
qvalue
DESeq
Sequencing
Organism
qvalue
DESeq
updated 12.5 years ago by
Naomi Altman
★ 6.0k • written 12.5 years ago by
Markus Grohme
▴ 20
0
votes
5
replies
1.6k
views
Bioconductor's qvalue package not working on Macs!
qvalue
qvalue
updated 11.7 years ago by
Wolfgang Huber
★ 13k • written 11.7 years ago by
Josh B
▴ 30
67
votes
8
replies
55k
views
conceptual question about FDR, FDR adjusted p-value and q-value
fdr
qvalue
updated 7.6 years ago by
Gordon Smyth
50k • written 11.4 years ago by
Jack Luo
▴ 440
0
votes
3
replies
2.2k
views
install qvalue
qvalue
qvalue
updated 10.4 years ago by
Martin Morgan
25k • written 10.4 years ago by
Guest User
★ 13k
0
votes
7
replies
4.0k
views
Q-values way smaller than P-values! Is that kosher?
qvalue
qvalue
updated 10.4 years ago by
Michael Love
42k • written 10.4 years ago by
Joshua Banta
▴ 30
2
votes
10
replies
2.8k
views
Package qvalue - can it be installed without TCL-TK support?
qvalue
qvalue
updated 9.2 years ago by
Storey, John D.
▴ 100 • written 10.0 years ago by
Giuseppe Gallone
▴ 170
2
votes
6
replies
1.7k
views
Problem testing qvalue 2.0.0
qvalue
updated 8.8 years ago by
Storey, John D.
▴ 100 • written 8.8 years ago by
tillea
• 0
4
votes
5
replies
6.3k
views
Unable to use qvalue. Estimated pi0 is <=0
qvalue
usage qvalue
updated 8.5 years ago by
Gordon Smyth
50k • written 8.5 years ago by
robandclara
• 0
1
vote
2
replies
7.3k
views
Error in dyn.load(file, DLLpath = DLLpath, ...) :
R
qvalue
updated 8.0 years ago by
Martin Morgan
25k • written 8.1 years ago by
HS
▴ 10
6
votes
2
replies
1.3k
views
Anomal pvalue distribution and qvalue calculation
qvalue
pvalue histogram
multiple testing correction
updated 5.9 years ago by
Nikos Ignatiadis
▴ 180 • written 5.9 years ago by
oliver.selmoni
▴ 10
9
votes
5
replies
4.3k
views
Finding DE genes from RNA-seq data
edgeR
pvalue
qvalue
fpkm
differential gene expression
updated 5.6 years ago by
Steve Lianoglou
★ 13k • written 5.6 years ago by
Harrisonesmith
• 0
2
votes
3
replies
6.4k
views
Package is not available for R version 3.5.0
qvalue
NBPSeq
updated 5.9 years ago by
Gordon Smyth
50k • written 5.9 years ago by
Gary
▴ 20
0
votes
1
reply
136
views
FDR via q-value
qvalue
updated 24 days ago by
James W. MacDonald
65k • written 27 days ago by
John
• 0
0
votes
1
reply
1.5k
views
loading qvalue library causes R to abort
qvalue
qvalue
updated 9.9 years ago by
Dan Tenenbaum
★ 8.2k • written 9.9 years ago by
Guest User
★ 13k
1
vote
5
replies
1.8k
views
Hm... segfault when using qvalue 1.39.1, has anyone else encountered this?
qvalue
segfault
9.6 years ago • updated 6.3 years ago
Leonardo Collado Torres
★ 1.0k
1
vote
2
replies
4.6k
views
clusterProfiler : How works the q-value filtering ? What is a good cutoff ? Is this like an FDR ?
clusterprofiler
qvalue
updated 7.6 years ago by
Guangchuang Yu
★ 1.2k • written 7.6 years ago by
ZheFrench
▴ 60
1
vote
2
replies
2.7k
views
Corrupt Database Error When Loading qvalue() Package
qvalue
library
software error
package installation
package updates
7.5 years ago
tah340
• 0
1
vote
1
reply
2.8k
views
Q value obtained from QValue package is lower than P value?
qvalue
pvalue
r
multiple comparisons
updated 7.3 years ago by
Storey, John D.
▴ 100 • written 7.3 years ago by
tombernardryan
▴ 50
1
vote
1
reply
1.6k
views
adjPval and qvalue
qvalue
maanova
qvalue
maanova
updated 18.2 years ago by
James W. MacDonald
65k • written 18.2 years ago by
sabrina.shao
▴ 220
0
votes
3
replies
3.2k
views
SAM and qvalue
qvalue
qvalue
updated 17.5 years ago by
Holger Schwender
▴ 900 • written 17.5 years ago by
Nicolas Servant
▴ 260
0
votes
1
reply
1.7k
views
P-value distribution acceptable for qvalue
qvalue
pvalue histogram
updated 6.9 years ago by
Laurent Gatto
1.6k • written 6.9 years ago by
kerrypop
▴ 30
0
votes
9
replies
3.6k
views
unable to install qvalue..
qvalue
qvalue
updated 13.2 years ago by
Martin Morgan
25k • written 13.2 years ago by
Saurabh Bundela
▴ 30
0
votes
1
reply
1.0k
views
Limma background subtraction etc
limma
qvalue
limma
qvalue
updated 20.6 years ago by
Gordon Smyth
50k • written 20.6 years ago by
Jason Skelton
▴ 510
8
votes
2
replies
5.1k
views
qvalue package throws error when used on any p-values but hedenfalk example
qvalue
updated 6.3 years ago by
Storey, John D.
▴ 100 • written 6.3 years ago by
ilikescience1
▴ 40
0
votes
1
reply
4.7k
views
Problem installing dartR: package 'qvalue' is not available for R version 3.5.1
qvalue
dartR
updated 5.6 years ago by
Martin Morgan
25k • written 5.6 years ago by
mumpalsson
• 0
4
votes
6
replies
1.4k
views
Question about the usage of Package, qvalue
statistical significance
p-value
q-value
FDR
qvalue
4.4 years ago
manozawa
▴ 10
1
vote
2
replies
1.4k
views
Cannot re-create q-values from the p-values in the DiffTable.
cummeRbund
pvalue
adjusted pvalue
qvalue
updated 8.3 years ago by
James W. MacDonald
65k • written 8.3 years ago by
Sameet Mehta
▴ 30
0
votes
0
replies
1.2k
views
affymetrix in maanova, code
qvalue
maanova
qvalue
maanova
18.4 years ago
Morten
▴ 300
1
vote
4
replies
3.7k
views
Issue with qvalue function: Error in smooth.spline(lambda, pi0, df = smooth.df) : missing or infinite values in inputs are not allowed
qvalue
4.6 years ago
anamaria
▴ 10
0
votes
0
replies
1.1k
views
blocking in limma gives an estimability problem
GO
hgu95av2
Ruuid
multtest
affy
graph
limma
RBGL
qvalue
Category
affyio
GO
hgu95av2
17.9 years ago
Pedro López Romero
▴ 360
0
votes
4
replies
2.6k
views
Unable to load qvalue package
qvalue
8.4 years ago
lgvazdela
• 0
0
votes
0
replies
1.0k
views
qvalue package:pFDR generation from pvalues
qvalue
qvalue
13.1 years ago
viritha kaza
▴ 580
0
votes
0
replies
654
views
Storey's qvalue and interpreting p-value histogram
qvalue
2.2 years ago
mikhael.manurung
▴ 270
0
votes
0
replies
1.4k
views
qvalue ( ) ERROR: The estimated pi0 <= 0....
qvalue
qvalue
19.5 years ago
SAURIN
★ 1.1k
0
votes
0
replies
856
views
installation of package 'qvalue' had non-zero exit status (
qvalue
2.3 years ago
natasha.tilich
• 0
0
votes
0
replies
1.1k
views
P>1 (edgeR and sage.test)
SAGE
qvalue
SAGE
qvalue
13.9 years ago
Naomi Altman
★ 6.0k
0
votes
0
replies
1.0k
views
3 empty plots when I use qvalue
qvalue
qvalue
10.8 years ago
Emma Timmins-Schiffman
▴ 10
42 results • Page
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Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db")
by
Patadù
▴ 10
Hi @marcelramos Thanks for the clarification. Yes, I have installed `org.Vdahlaie.eg.db` using the code you and Guido suggested and now i…
Comment: European Bioconductor Conference 2023 planning
by
angelaesper43
• 0
@Maria Doyle[sexdolltech][1]Hosting EuroBioC provides an excellent opportunity to showcase Bioconductor and computational biology research …
Comment: Ensembl plants at annotationHub?
by
Johannes Rainer
★ 2.0k
Dear Daniele, for which Ensembl release would you need the data? the most recent is 112, but if you used a different version before it wou…
Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Dear Johannes, Would it be possible to create the EnsDb for Triticum aestivum (IWGSC)? Thank you very much, Daniele
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
by
BioinfGuru
▴ 30
Figured it out with ?eigencorplot, thanks Michael. I was trying to pass 10 PCs when I only had 8, and I was including metadata columns that…
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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