Bioconductor Replicates

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conditions replicates SmallRNAData DESeq2

updated 4 months ago by Kevin Blighe ★ 3.9k • written 5 months ago by samer ▴ 10

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651

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DESeq2 timecoursedata replicates

updated 14 months ago by Michael Love 42k • written 14 months ago by fepesanz8 • 0

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2.7k

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deseq2 R bioconductor RNA_Seq replicates

updated 4.5 years ago by swbarnes2 ★ 1.4k • written 4.5 years ago by aishu.jp ▴ 30

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1.8k

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rnaseq deseq2 differential expression batch effect replicates

updated 4.7 years ago by Michael Love 42k • written 4.7 years ago by Nik dAK ▴ 10

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3.2k

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deseq2 replicates error DESeqDataSetFromMatrix

updated 5.1 years ago by Michael Love 42k • written 5.1 years ago by Yonatan Amzaleg • 0

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2.8k

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limma proteomics replicates

updated 5.8 years ago by Aaron Lun ★ 28k • written 5.8 years ago by ivansilbern • 0

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2.1k

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limma duplicatecorrelation replicates

7.0 years ago rwalke13 • 0

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1.6k

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deseq2 replicates

updated 7.3 years ago by Michael Love 42k • written 7.3 years ago by le2336 ▴ 20

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5.1k

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DESEQ deseq2 deseq replicates biologicalreplicates

8.5 years ago wd ▴ 30

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1.2k

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rnbeads replicates

updated 8.5 years ago by rnbeads • 0 • written 8.5 years ago by Jon Manning ▴ 40

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904

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replicates

8.7 years ago efratdahan21 • 0

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2.3k

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edgeR rna-seq replicates

updated 9.3 years ago by James W. MacDonald 65k • written 9.3 years ago by eb0906 • 0

12 results • Page 1 of 1

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Comment: Ensembl plants at annotationHub? by Daniele • 0

Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!

Comment: Numerical differences in DESeq2 output depending on different design matrix cons by swbarnes2 ★ 1.4k

If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?

Comment: DESeq2- Mysterious interaction suppresses DEGs by shaunpeterson • 0

The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…

Comment: STRINGdb : error with string_db$plot_network() by damian.szk ▴ 80

ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library. However, I will look at why "HTTP" …

Comment: STRINGdb : error with string_db$plot_network() by ninidea • 0

> Does the vignette produce the same error? No. Anyway, I finally solved the problem. I don't know why, but I removed: protocol='http' fr…

Votes

Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")

Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa

Rsubread counting peaks ATACseq

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Popular Question to Vincent J. Carey, Jr. 6.7k

Popular Question to Koen Van den Berge ▴ 180