Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
rnaseqDTU
•
reset
2
votes
2
replies
705
views
Inconsistent Dirichlet-multinominal coefficient and Beta-Binominal coefficient for a transcript in DTU analysis.
rnaseqDTU
DRIMSeq
22 months ago
wangziwei0010
▴ 10
1
vote
5
replies
1.3k
views
Separate exogenous from endogenous transcripts using Salmon RNAseq DTU
rnaseqDTU
2.1 years ago • updated 2.0 years ago
ksong
▴ 10
2
votes
7
replies
1.3k
views
Fold Change for rnaseq DTU
DEXSeq
rnaseqDTU
2.7 years ago
rbenel
▴ 40
0
votes
5
replies
1.2k
views
DTU analysis with tximport-DRIM-Seq-DEXSeq-stageR workflow starting from StrinTie output
RNA-seq
DRIMSeq
DEXSeq
rnaseqDTU
2.8 years ago
bioinformatic_trainee
▴ 10
0
votes
1
reply
620
views
Plotting results of rnaseqDTU
rnaseqDTU
updated 3.5 years ago by
Michael Love
42k • written 3.5 years ago by
rohitsatyam102
▴ 20
0
votes
1
reply
715
views
How to obtain the specific genelists mentioned in the RNASeq DTU workflow?
rnaseqdtu
RNASeq
DEXSeq
DESeq2
updated 3.9 years ago by
Michael Love
42k • written 3.9 years ago by
debatosh das
▴ 10
0
votes
2
replies
716
views
rnaseqDTU Workflow, Precision estimation error.
rnaseqDTU
updated 4.0 years ago by
Michael Love
42k • written 4.0 years ago by
dixit.anirudha
• 0
2
votes
2
replies
846
views
Statistics for within-condition transcript abundance comparisons
rnaseqDTU
updated 4.7 years ago by
Michael Love
42k • written 4.7 years ago by
nicog
• 0
1
vote
3
replies
1.2k
views
Visualization for DE transcripts
rnaseqdtu
4.9 years ago
rbenel
▴ 40
1
vote
1
reply
1.4k
views
rnaseqDTU log2fold change DEXSeq
DEXSeq
DTU
salmon
rnaseqDTU
foldchange
updated 5.1 years ago by
Michael Love
42k • written 5.4 years ago by
fiona.dick91
▴ 60
0
votes
11
replies
1.6k
views
Issue during transcript variant analysis using rnaseqDTU-DRIMseq-DEXseq.
rnaseqDTU
DRIMseq
DEXseq
rna-seq
5.1 years ago
saddamhusain77
• 0
16
votes
25
replies
3.1k
views
dtuScaledTPM vs lengthScaledTPM in DTU analysis
tximport
dtu
salmon
TPM
rnaseqDTU
written 5.1 years ago by
fiona.dick91
▴ 60
2
votes
4
replies
1.6k
views
stageR: Error in stageWiseAdjustment
stageR
rnaseqDTU
DRIMSeq
DEXSeq
5.3 years ago
d-joester
▴ 20
2
votes
8
replies
1.2k
views
stageR following DEXSeq two-stage analysis
rnaseqdtu
5.3 years ago
rbenel
▴ 40
3
votes
9
replies
2.2k
views
Differential transcript expression (DTE) analysis
rnaseqDTU
dtu
updated 5.3 years ago by
Michael Love
42k • written 5.3 years ago by
rbenel
▴ 40
2
votes
2
replies
1.1k
views
rnaseqDTU DTU workflow - pots-hoc Filter
DTU
DRIMSeq
rnaseqDTU
updated 5.3 years ago by
Michael Love
42k • written 5.3 years ago by
fiona.dick91
▴ 60
0
votes
3
replies
1.1k
views
Post-hoc filtering on the standard deviation in proportions
drimseq
rnaseqdtu
stager
updated 5.5 years ago by
Michael Love
42k • written 5.5 years ago by
Jack.Hearn
• 0
1
vote
5
replies
1.5k
views
Plotting Expression of Differential Transcripts plotDEXseq
DEXSeq
StageR
rnaseqDTU
updated 5.6 years ago by
Michael Love
42k • written 5.6 years ago by
rbenel
▴ 40
18 results • Page
1 of 1
Recent ...
Replies
Comment: Ensembl plants at annotationHub?
by
Johannes Rainer
★ 2.0k
You can get the `EnsDb` EnsDb.Taestivum.v112.sqlite (for Ensembl 112/ ensemblgenomes 59) [here](https://www.dropbox.com/sh/msic0luivbldmb7/…
Comment: Errors in chromosome annotation-biomaRt
by
blackwidowzzz
• 0
I recommend using a different dataset specific to your rat genome assembly version 8. You can search for available datasets within Ensembl …
Answer: Errors in chromosome annotation-biomaRt
by
James W. MacDonald
66k
If you are just using HGNC symbols for the lookup, and you are trying to get NCBI IDs, then I wouldn't use `biomaRt` because it's based on …
Comment: Help with ENmix readidat
by
James W. MacDonald
66k
Please don't add to posts from two years ago. Instead make a new post. Also, please read the help page for `readidat`. The only reason to …
Comment: LRT, more than two conditions and pairwise comparisons
by
James W. MacDonald
66k
In that case, probably easiest to subset to the groups being compared.
Votes
Answer: Error retrieving ensembl gene id using biomaRt...
Comment: LRT, more than two conditions and pairwise comparisons
Answer: Control group between 2 batches have different expression in RNAseq data
Answer: How to remove batch effect to combine RNAseq data from 2 different experiments?
Comment: DESeq2- Mysterious interaction suppresses DEGs
Awards
• All
Popular Question
to
bas_work
▴ 30
Popular Question
to
landenshanie
▴ 40
Popular Question
to
minardsmitha
▴ 10
Teacher
to
Vincent J. Carey, Jr.
6.7k
Popular Question
to
Mike
• -60
Locations
• All
Spain,
13 minutes ago
Netherlands,
16 minutes ago
Spain,
32 minutes ago
India,
37 minutes ago
Japan,
43 minutes ago
Traffic: 708 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6