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rsubread
•
reset
0
votes
6
replies
368
views
Using featureCounts with SAF annotation file gives "Error: only GTF files contain additional attributes"
RNASeq
Rsubread
6 days ago • updated 14 hours ago
atan
• 0
0
votes
0
replies
104
views
Exon-exon Junction Analysis for Variable-length Exons
Rsubread
5 weeks ago
Dario Strbenac
★ 1.5k
0
votes
2
replies
293
views
Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`
featureCounts
Rsubread
8 weeks ago • updated 5 weeks ago
isaac.vock
• 0
2
votes
3
replies
286
views
Rsubread crashes Rstudio while alignment
Rsubjunc
Rsubread
updated 9 weeks ago by
Wei Shi
★ 3.6k • written 9 weeks ago by
thomas.heigl.ibk
• 0
0
votes
1
reply
209
views
Rsubread: buildindex() should support multiple reference files
Rsubread
updated 10 weeks ago by
Gordon Smyth
50k • written 10 weeks ago by
Gerhard Thallinger
▴ 180
0
votes
0
replies
166
views
Feature Counts -R XS Read Assignment Tag
FeatureCounts
Rsubread
12 weeks ago
chris2.a.white
• 0
1
vote
1
reply
313
views
featureCounts unable to assign long reads to one specific isoform
featureCounts
Rsubread
updated 12 weeks ago by
Wei Shi
★ 3.6k • written 3 months ago by
Alex
• 0
0
votes
0
replies
183
views
Unclear exon-exon connection after RSubjunc() usage
IGV
Rsubjunc
Rsubread
3 months ago
thomas.heigl.ibk
• 0
7
votes
28
replies
6.2k
views
Rsubread::featureCounts extremely slow on some annotations
rsubread
featurecounts
updated 3 months ago by
Gordon Smyth
50k • written 9.2 years ago by
Ryan C. Thompson
★ 7.9k
1
vote
1
reply
424
views
RSubread cellCounts - memory mapping error with NovoSeq but not NextSeq output
Rsubread
updated 12 weeks ago by
Yang Liao
▴ 380 • written 3 months ago by
Joe Marturano
▴ 10
0
votes
4
replies
487
views
Adjusting featureCounts settings in Galaxy for miRNA overlaps
featureCounts
Rsubread
updated 4 months ago by
Gordon Smyth
50k • written 4 months ago by
tjgray4
• 0
4
votes
6
replies
797
views
[BUG] Rsubread::featureCounts quirk in CORE files: different target list ordering for same target lists
featurecounts
Rsubread
4 months ago • updated 3 months ago
isaac.vock
• 0
1
vote
2
replies
308
views
Problems with Feature counting
Rsubread
BAMfiles
GTFfile
4 months ago
mirjanakessler
• 0
0
votes
1
reply
361
views
Strange behaviour in Rsubread when trimming sequences leading to a change inthe order of the reads
Rsubread
updated 6 months ago by
Gordon Smyth
50k • written 6 months ago by
glopez
• 0
2
votes
2
replies
641
views
Long-read mode in featureCounts
Rsubread
LongRead
7 months ago
mmisak
• 0
0
votes
2
replies
1.3k
views
using featureCounts (Subread) to count only spliced reads per gene - behavior of --splitOnly with PE data?
Rsubread
8 months ago
Gregory
• 0
0
votes
0
replies
312
views
Fatal error: Wrong thread calling 'RunFinalizers'
featureCount
Rsubread
HPC
8 months ago
kthapa
• 0
0
votes
2
replies
555
views
Rsubread: .bai file lacks data for `samtools idxstats`
Rsubread
8 months ago
Gerhard Thallinger
▴ 180
0
votes
0
replies
340
views
Rsubread subjunc reporting 255 kb introns with exon limits mapping to A-rich region
Rsubread
updated 8 months ago by
Gordon Smyth
50k • written 8 months ago by
Cosmin Saveanu
• 0
2
votes
3
replies
721
views
Rsubread: subjunc() loads index repeatedly
Rsubread
10 months ago • updated 9 months ago
Gerhard Thallinger
▴ 180
0
votes
2
replies
648
views
R session aborts after running align function on Rsubread
Rsubread
Alignment
updated 9 months ago by
Wei Shi
★ 3.6k • written 9 months ago by
amanda.gutierrez
• 0
0
votes
2
replies
1.1k
views
understanding differences in RSEM, STAR outputs and featureCounts
RNASeqData
Rsubread
mapping
featurecounts
updated 9 months ago by
James W. MacDonald
66k • written 9 months ago by
vitoriastavis
• 0
0
votes
1
reply
513
views
Relationship between gene_id and transcript_id genomic coordinates
Rsubread
ensembldb
updated 10 months ago by
James W. MacDonald
66k • written 10 months ago by
Ya
• 0
1
vote
1
reply
692
views
featureCounts bug with unpaired reads
Rsubread
featureCounts
updated 10 months ago by
Yang Liao
▴ 380 • written 10 months ago by
StevenE.Strong
• 0
0
votes
2
replies
638
views
'Killed' error during RNAseq alignment
subjunc
data.frame
myExons
Rsubread
updated 11 months ago by
ATpoint
★ 4.2k • written 11 months ago by
Sukeerthi
• 0
1
vote
6
replies
1.9k
views
Rsubread - Error on buildindex - big ref sequence
Rsubread
updated 10 months ago by
Yang Liao
▴ 380 • written 4.2 years ago by
bryan.penning
• 0
2
votes
2
replies
1.6k
views
Running featureCounts() in 'IntersectionStrict' mode
rsubread
featurecounts
summarizeoverlaps
updated 8 weeks ago by
isaac.vock
• 0 • written 8.0 years ago by
Jon Manning
▴ 90
3
votes
16
replies
18k
views
featureCounts - paired-end data
featurecounts
rsubread
updated 11 months ago by
Robert
• 0 • written 9.1 years ago by
samuel collombet
▴ 140
28 results • Page
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Which I care about. [Papa's games][1] thank you for sharing the information. [1]: https://papasgamesfree.github.io
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If you have functions in another R document, you have to `source` that document to load the functions into your workspace. Just like you wo…
Comment: Using featureCounts with SAF annotation file gives "Error: only GTF files contai
by
atan
• 0
Thank you! I ended up running it with a gtf on command line, partially because I couldn't figure out how to list multiple files in R for in…
Comment: Using featureCounts with SAF annotation file gives "Error: only GTF files contai
by
atan
• 0
For some reason, that's still not working for me on command line. I ended up figuring out another way around, though, by converting the g…
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Reduce the number of nodes appear in the cnetplot of clusterprofiler
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