Showing : statistics • reset
10
votes
14
replies
13k
views
how DESeq calculates p-value ?
deseq differential gene expression statistics p-value
updated 3.2 years ago by ▴ 20 • written 8.3 years ago by ▴ 30
8
votes
8
replies
6.8k
views
Voom transformation from counts and normalization to negative values
rnaseq voom limma tcga statistics
updated 5.6 years ago by ★ 7.9k • written 5.6 years ago by ▴ 60
25
votes
7
replies
11k
views
Effect of lfcThreshold on p-value in DESeq2
deseq2 rnaseq statistics
updated 7 months ago by ▴ 10 • written 6.6 years ago by ▴ 30
0
votes
6
replies
1.3k
views
regression analysis for epic array methylation data using limma
limma Epigenetics STATISTICS R
24 months ago Jitendra ▴ 10
1
vote
6
replies
2.8k
views
DESeq2 unbalanced sample size
deseq2 bioconductor bioinformatics statistics
updated 14 months ago by 42k • written 5.4 years ago by • 0
0
votes
5
replies
1.1k
views
Comparing sets of differentially expressed genes
deseq2 rnaseq statistics
8.6 years ago sunkid • 0
3
votes
5
replies
1.4k
views
P adjusted values in Deseq2
DESeq2 Statistics
written 3.3 years ago by • 0
0
votes
4
replies
2.8k
views
XCMS for targeted metabolomic/lipidomics/proteomics
xcms metabolomics lipidomics statistics
8.4 years ago Titan • 0
19
votes
4
replies
8.2k
views
Confidence intervals on edgeR logFC
edgeR statistics confidence interval
updated 8.1 years ago by • 0 • written 9.7 years ago by ▴ 40
1
vote
4
replies
1.3k
views
Do the gene set statistics of the ROAST paper correspond to those implemented in the .roastEffects R function?
limma roast statistics source code gene set testing
5.7 years ago Andrea Carenzo • 0
0
votes
4
replies
5.6k
views
10 multiple comparisons in DESeq2
deseq2 rnaseq statistics
updated 7.9 years ago by 42k • written 7.9 years ago by • 0
2
votes
4
replies
1.2k
views
Removing batch effect on edgeR when interactons are looked at
rnaseq edger statistics model matrix
updated 6.6 years ago by ★ 13k • written 6.6 years ago by ▴ 90
0
votes
3
replies
995
views
batch effect in EPIC array data
statistics Epigenetics R
updated 15 months ago by ▴ 730 • written 15 months ago by ▴ 10
8
votes
3
replies
3.2k
views
Differing topTable() results with Limma with and without specifying coefficient
limma microarray statistics
updated 8.1 years ago by 50k • written 8.1 years ago by • 0
2
votes
3
replies
1.5k
views
RNAseq outlier is a critical sample
rnaseq outlier statistics batch effect
updated 7.9 years ago by 50k • written 7.9 years ago by • 0
3
votes
3
replies
1.4k
views
Using alternative LFC shrinkage methods for computing p-values in DESeq2
deseq2 apeglm statistics
updated 5.0 years ago by 42k • written 5.0 years ago by • 0
0
votes
3
replies
1.5k
views
Reading large file (15GB) in R
R Rstudio Bioconducter statistics
updated 2.2 years ago by 21k • written 2.3 years ago by ▴ 10
0
votes
2
replies
1.3k
views
Compute test-score statistical significance using control-scores from shuffled population
statistics hypotheses R
8.2 years ago Bade ▴ 310
1
vote
2
replies
2.1k
views
how to perform pre ranked GSEA in R?
r microarray statistics GSEA
updated 7.2 years ago by • 0 • written 9.2 years ago by ▴ 80
1
vote
2
replies
972
views
What to do with microarray probes that catch multiple genes?
affymetrix microarrays microarray probe statistics
updated 5.7 years ago by 65k • written 5.7 years ago by • 0
2
votes
2
replies
7.8k
views
edgeR: How is FDR calculated for logFC? (False Discovery Rate)
edgeR bioconductor fdr statistics differential gene expression
7.4 years ago jol.espinoz ▴ 40
1
vote
2
replies
946
views
Newbie to all of this
bioconductor statistics
5.6 years ago sportwoo • 0
0
votes
2
replies
1.1k
views
comparing two GOstats result lists
gostats statistics
updated 5.9 years ago by 65k • written 5.9 years ago by ▴ 20
1
vote
2
replies
2.7k
views
the statistical test that DESeq2 use
deseq2 statistics
updated 7.3 years ago by ★ 7.9k • written 7.3 years ago by • 0
1
vote
2
replies
1.1k
views
Re-calculation of Padj (P adjusted value)
statistics Benjamini–Hochberg procedure deseq2
updated 3.6 years ago by 42k • written 3.6 years ago by ▴ 60
2
votes
2
replies
1.1k
views
limma for gene expression analysis with big and unbalanced sample size
limma microarray statistics
updated 17 days ago by • 0 • written 8.0 years ago by • 0
2
votes
2
replies
2.9k
views
How adjusted p-values are calculated in limma
limma r transcriptomics FDR statistics
updated 4.6 years ago by 50k • written 4.6 years ago by ▴ 10
0
votes
2
replies
708
views
Results analysis of differential gene expression using DESeq2 package
RnaSeqSampleSize statistics DESeq2
updated 17 months ago by ★ 1.4k • written 17 months ago by • 0
0
votes
2
replies
1.0k
views
News: Ascona Workshop “Biological systems: from first principles to data-​driven modelling and back” 27. 3. - 1. 4. 2022
theory modeling statistics ascona Workshop
2.6 years ago • updated 15 months ago Wolfgang Huber ★ 13k
1
vote
1
reply
371
views
Further analysis after limma regression output
statistics Epigenetics limma
updated 7 months ago by 65k • written 7 months ago by ▴ 10
1
vote
1
reply
1.4k
views
FPKM t-test vs DEseq2
DESeq2 statistics rna-seq
updated 13 months ago by ★ 4.1k • written 13 months ago by • 0
0
votes
1
reply
799
views
How to handle batch effect and interaction with experimental variables
deseq2 statistics differential expression
4.5 years ago A • 0
0
votes
1
reply
768
views
Exclude interaction terms from the design
deseq2 statistics modelling
updated 4.6 years ago by 42k • written 4.6 years ago by • 0
0
votes
1
reply
337
views
DEseq2 : Complex design with a mixture of male and female mice
statistics DESeq2
updated 5 months ago by 42k • written 5 months ago by • 0
0
votes
1
reply
987
views
Efficient resampling in GENESIS or another Bioconductor GWAS package to obtain empirical p-values?
GENESIS GWAS resampling resample statistics
5.3 years ago naglemi ▴ 10
3
votes
0
replies
2.2k
views
Job: Postdoctoral Scientist, Statistical Bioinformatics and Proteomics, WEHI Australia
job proteomics Job statistics
4.5 years ago • updated 4.4 years ago Gordon Smyth 50k
1
vote
0
replies
911
views
Job: Post-Doctoral Research Fellow, Cancer Genomics
genomics seattle bioinformatics data science statistics Job
4.0 years ago Fred Hutch (Recruiting) ▴ 40
0
votes
0
replies
774
views
Job: Two Bioinformatics Fellowship Positions at US EPA
bioinformatics toxicology Job sequenicng statistics
3.8 years ago • updated 3.5 years ago whduke • 0
2
votes
0
replies
866
views
Job: Multiple open positions in biomedical statistics at Eurac Research, Italy
epidemiology statistics bioinformatics Job
3.6 years ago Johannes Rainer ★ 2.0k
0
votes
0
replies
932
views
Job: Biostatistics/Bioinformatics Research Scientist at UNC Charlotte
R statistics pathview singlecellRNA-Seq
3.5 years ago • updated 3.1 years ago Luo Weijun ★ 1.6k
0
votes
0
replies
1.1k
views
Job: Proteomics Bioinformatician
JobPosting Proteomics Statistics Job
3.4 years ago Laura • 0
0
votes
0
replies
916
views
Job: Scientist/Senior Scientist, Statistical Geneticist
Sequencing Genetics GeneticsPed statistics
3.3 years ago António Miguel de Jesus Domingues ▴ 510
0
votes
0
replies
954
views
Job: Bioinformatician at MiroBio, Oxford, UK
Transcriptomics Bioconductor Statistics Job Biocon
3.2 years ago m.jackson • 0
0
votes
0
replies
244
views
multipollutant models
statistics Regression r limma
5 months ago Jitendra ▴ 10
0
votes
0
replies
930
views
Job: Biostatistics/Bioinformatics Research Scientist at UNC Charlotte
singlecellRNA-Seq pathview statistics R
3.1 years ago • updated 3.0 years ago Luo Weijun ★ 1.6k
0
votes
0
replies
2.0k
views
Job: Full position as Statistician at ETH Zurich in Personalized Medicine Consultancy/Data Analysis
statistics consultancy personalized medicine Job
9.6 years ago Daniel Stekhoven ▴ 10
0
votes
0
replies
676
views
Job: PhD position in Bioinformatics in Jena
Statistics ComputationalBiology Aging MachineLearning
16 months ago alena.vanboemmel • 0
0
votes
0
replies
203
views
Job: Statistics Lectureships at St Andrews
JobPosting computational statistics
12 weeks ago Andy Lynch ▴ 120
1
vote
0
replies
654
views
Statistical test for genomic annotation by ChIPseeker
statistics PeakAnnotation ChIPseeker GuangchuangYu
21 months ago arisarkar88 ▴ 40
1
vote
0
replies
775
views
Job: Research Fellow in Prostate Cancer Proteomics (Bioinformatics/Stats/Data Analysis) - University of St Andrews
Multiomics Proteomics Cancer Statistics Bioinformatics
21 months ago Andy Lynch ▴ 120
50 results • Page 1 of 1
Recent ...
Replies
Comment: Ensembl plants at annotationHub? by Daniele • 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by swbarnes2 ★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
Comment: DESeq2- Mysterious interaction suppresses DEGs by shaunpeterson • 0
The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…
Comment: STRINGdb : error with string_db$plot_network() by damian.szk ▴ 80
ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library. However, I will look at why "HTTP" …
Comment: STRINGdb : error with string_db$plot_network() by ninidea • 0
> Does the vignette produce the same error? No. Anyway, I finally solved the problem. I don't know why, but I removed: protocol='http' fr…
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
Awards • All
Popular Question to Vincent J. Carey, Jr. 6.7k
Popular Question to Koen Van den Berge ▴ 180
Popular Question to shepherl 3.9k
Popular Question to Ken C • 0
Popular Question to Johannes Rainer ★ 2.0k
Locations • All
WEHI, Melbourne, Australia, 23 minutes ago
United States, 43 minutes ago
United States, 47 minutes ago
San Diego, 56 minutes ago
Sweden, 1 hour ago
Traffic: 719 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6