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Is it appropriate to apply linear mixed models to Voom transformed data?
stats
r
RNASeqData
limma
voom
5 months ago
pl23
• 0
3
votes
4
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2.1k
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R session aborted: prcomp
Biobase
stats
updated 3.1 years ago by
Kevin Blighe
★ 3.9k • written 3.1 years ago by
Gero
• 0
0
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0
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1.3k
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Job:
Two Post-doctoral Positions at University of Campinas
post-doc
job
stats
computational biology
Job
7.7 years ago
Benilton Carvalho
★ 4.3k
0
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0
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1.4k
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Job:
Data Scientist / Bioinformatician / Statistician at University of California
R
python
stats
bioinformatics
perl
Job
7.8 years ago
clif.duhn
• 0
5
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6
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1.4k
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getting a matrix with diagonal =1
stats
updated 8.4 years ago by
Aaron Lun
★ 28k • written 8.4 years ago by
Angel
▴ 40
3
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3
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2.2k
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ribosome profiling analysis with different dispersions
deseq2
linear model
ribosome profiling
stats
updated 8.8 years ago by
Ryan C. Thompson
★ 7.9k • written 8.8 years ago by
Jake
▴ 90
2
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2
replies
2.2k
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Memory management in R
stats
updated 9.1 years ago by
Martin Morgan
25k • written 9.1 years ago by
mrk.carty
▴ 30
2
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5
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1.6k
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Download the stats of Bioconductor
bioconductor
stats
9.3 years ago
Lluís Revilla Sancho
▴ 730
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Comment: all variables in design formula must be columns in colData (Deseq2) error
by
Galina
• 0
thank you!
Comment: all variables in design formula must be columns in colData (Deseq2) error
by
ATpoint
★ 4.1k
coldata_rat <- data.frame(conditions=..., batch=...)
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
by
robersy
• 0
Thank you all for your comments. I will follow your suggestions.
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
Ken C
• 0
Hi Michael, thanks a lot for your prompt reply! Not sure if this is appropriate or if you are the right person to ask -- is there anything…
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
Ken C
• 0
Well, if I look at genes with baseMean>50, then the relative absolute difference in log2FoldChange (say over the absolute log2FoldChange of…
Votes
biomaRt not working - lazy table error
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
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