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subset
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How to subset a list of genes from a curated reference list of genes
R
subset
DifferentialExpression
updated 19 months ago by
Basti
▴ 780 • written 19 months ago by
Manav
• 0
3
votes
2
replies
1.3k
views
Import or Subset VCF PASS Variants
VariantAnnotation
subset
ScanVcfParam
updated 4.1 years ago by
Martin Morgan
25k • written 4.1 years ago by
Dario Strbenac
★ 1.5k
2
votes
5
replies
2.1k
views
How to construct a subset of TxDb object from TxDb.Hsapiens.UCSC.hg38.knownGene and selected genes
TxDb.Hsapiens.UCSC.hg38.knownGene
subset
TxDb object
5.0 years ago
Ruichao.Zeng
▴ 20
1
vote
2
replies
1.0k
views
Newbie question: how do I address a subset obtained by split()?
flowStats
newbie
split
subset
flowCore
5.7 years ago
yulia.chupalova
• 0
2
votes
1
reply
2.1k
views
Error in DESeq2 plotMA from object subset
deseq2
maplot
subset
updated 6.3 years ago by
Michael Love
42k • written 6.3 years ago by
rbronste
▴ 60
0
votes
3
replies
2.7k
views
filtering out probes with no gene symbol from expressionSet
probe
filter
subset
gene symbol
affy
9.2 years ago
alakatos
▴ 130
6 results • Page
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Answer: Subsetting RNAseq data | voomaByGroup()
by
Gordon Smyth
50k
Judging from your MDS plot, cell types 1 and 2 look radically different, so it would make perfect sense to analyse them separately. There's…
Answer: Numerical differences in DESeq2 output depending on different design matrix cons
by
Michael Love
42k
Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.
Answer: DESeq2- Mysterious interaction suppresses DEGs
by
Michael Love
42k
Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…
Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
swbarnes2
★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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