Showing : toptable • reset
0
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2
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772
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decideTests vs topTable results
decideTests topTable limma
updated 11 months ago by 50k • written 11 months ago by ▴ 20
0
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2
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711
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Full list of differential genes not obtained in topTable
Microarray GEOquery topTable limma
updated 13 months ago by 50k • written 13 months ago by • 0
0
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1
reply
368
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NAs in some genes in topTable output
limma topTable
updated 16 months ago by 50k • written 16 months ago by ▴ 10
0
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2
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982
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limma voom; fitted lines, factors that aren't of interest, and hypothesis testing
topTable voom contrasts
2.7 years ago James • 0
2
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4
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2.4k
views
Why my limma DEG result in top Table all without significant meaning,showing logFC <1.5 or logFC>-1.5 ?
limma toptable deg logfc
written 5.7 years ago by • 0
6
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4
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1.3k
views
Limma outputs different results for same sample?
topTable MicroarrayData ebayes limma Microarray
3.3 years ago snijesh ▴ 20
0
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5
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1.2k
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eBayes options and decideTests method
limma eBayes decideTests topTable
updated 4.2 years ago by 50k • written 4.2 years ago by • 0
0
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3
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1.4k
views
Subsetting a data frame generated by topTable() {limma}
limma toptable microarray
updated 4.7 years ago by 50k • written 4.7 years ago by ▴ 30
3
votes
6
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2.2k
views
Help to understand my contrast.matrix and to interpret my topTable results
contrast matrix toptable makecontrasts differential gene expression
6.6 years ago stinehedensted • 0
1
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1
reply
1.7k
views
limma: The topTable function implementation when outputin the differential expression results from RNA-seq dataset?
limma voom edgeR toptable output
updated 6.8 years ago by ★ 28k • written 6.8 years ago by ▴ 10
11
votes
5
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13k
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Limma: how to get same output as topTable but for all the genes ?
limma toptable
updated 6.8 years ago by 50k • written 15.5 years ago by ▴ 190
1
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2
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1.3k
views
differentially expressed genes without contrasts
limma toptable makecontrasts contrast matrix
updated 6.9 years ago by ★ 7.9k • written 6.9 years ago by • 0
3
votes
3
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2.1k
views
Explanation of an ANOVA approach of multiple coefficients in limma with topTable in a microarray analysis
limma ANOVA topTable microarray
updated 7.6 years ago by 50k • written 7.6 years ago by ▴ 80
14
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16
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2.7k
views
TopTable Problem : Unique Adj.P.Val which is near 1
limma toptable
8.0 years ago giroudpaul ▴ 40
8
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10
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4.9k
views
Interpretation of confidence interval values for logFC returned from topTable function in limma with microarray dataset
limma topTable confidence interval effect size microarray
updated 8.2 years ago by 50k • written 8.2 years ago by ▴ 80
2
votes
2
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2.1k
views
Error while calling function topTable() from limma R package in microarray data analysis
limma microarray a4Core topTable statistical inference
updated 8.3 years ago by ★ 28k • written 8.3 years ago by ▴ 830
2
votes
4
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2.8k
views
Meta-Analysis after running limma on a normalized dataset
meta-analysis limma toptable
updated 8.8 years ago by ★ 28k • written 8.8 years ago by ▴ 20
10
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11
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7.7k
views
Standard error and effect size from Limma
effect size Limma toptable Standard Error
updated 8.8 years ago by 50k • written 8.8 years ago by ▴ 20
2
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4
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3.7k
views
report genes in intersection of Venn diagram with topTable?
rnaseq venn diagram limma toptable edgeR
updated 8.9 years ago by 50k • written 8.9 years ago by • 0
6
votes
7
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2.2k
views
what causes the difference in the topTable results by the two analyses using limma?
limma topTable
updated 9.7 years ago by ★ 28k • written 9.7 years ago by ▴ 550
20 results • Page 1 of 1
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Comment: Ensembl plants at annotationHub? by Daniele • 0
Thank you so much!
Answer: recount3 problem downloading data from source sra by Leonardo Collado Torres ★ 1.0k
Hi, I wasn't able to reproduce the issue on both bioc 3.19 (current release version) and 3.18 (closer to your session info). My guess is…
Answer: Running ENmix with mouse methylation manifest: readidat error - Error in readman by minardsmitha ▴ 10
Well it turns out there is a typo in the manifest file name. This particular issue is resolved by correcting the typo. A new error now …
Answer: Documenting resources in an `ExperimentHub` package? by James W. MacDonald 66k
The easiest way to do that IMO is to use emacs/ESS (or I believe there is some newfangled thing called RStudio? Not personally familiar, bu…
Comment: ChAMP installation issue by shepherl 3.9k
We are still waiting for the goseq to respond to our requests but will take action next week if it is not resolved. ChAMP is currently una…
Votes
Comment: Ensembl plants at annotationHub?
how to control age and gender effect in expression data using DESeq2
Answer: Error retrieving ensembl gene id using biomaRt...
Comment: LRT, more than two conditions and pairwise comparisons
Answer: Control group between 2 batches have different expression in RNAseq data
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