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1
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1
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283
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Comment:
Comment: between lane normalization upper quantile
10 weeks ago
davide risso
▴ 950
1
vote
1
reply
7.4k
views
Comment:
Comment: Normalised counts from RUVg in RUVSeq
5 months ago
davide risso
▴ 950
2
votes
1
reply
1.2k
views
Answer:
Answer: EDASeq normalization: genes with 0 counts
3.3 years ago
davide risso
▴ 950
0
votes
0
replies
1.6k
views
Comment:
Comment: RUVSeq package for adjusting two variables of interest
3.3 years ago
davide risso
▴ 950
0
votes
1
reply
1.8k
views
Comment:
Comment: ZINB-WaVE-DESeq2 with Bulk Data: Choice of Epsilon value, K and gene number
3.3 years ago
davide risso
▴ 950
0
votes
1
reply
1.6k
views
Comment:
Comment: RUVSeq package for adjusting two variables of interest
3.3 years ago
davide risso
▴ 950
0
votes
1
reply
1.6k
views
Comment:
Comment: RUVSeq package for adjusting two variables of interest
3.3 years ago
davide risso
▴ 950
0
votes
1
reply
1.8k
views
Answer:
Answer: ZINB-WaVE-DESeq2 with Bulk Data: Choice of Epsilon value, K and gene number
3.3 years ago
davide risso
▴ 950
1
vote
1
reply
1.8k
views
Answer:
A: How to work with duplicates calculating the differentially expressed genes in Ps
3.7 years ago
davide risso
▴ 950
2
votes
1
reply
1.3k
views
Comment:
C: Latent factors for differential expression
3.9 years ago
davide risso
▴ 950
0
votes
0
replies
3.2k
views
Answer:
A: cmdscale() error: NA values not allowed in 'd', ask for help.
3.9 years ago
davide risso
▴ 950
0
votes
1
reply
1.6k
views
Answer:
A: Should I use RUVseq on raw counts or on normalized counts coming from EDASeq pac
4.6 years ago
davide risso
▴ 950
0
votes
0
replies
2.5k
views
Answer:
A: Error: row names supplied are of the wrong length in RUVSeq
5.0 years ago
davide risso
▴ 950
1
vote
1
reply
2.2k
views
Comment:
C: Upper-quartile normalization before RUVg normalization?
5.0 years ago
davide risso
▴ 950
1
vote
1
reply
2.2k
views
Answer:
A: Upper-quartile normalization before RUVg normalization?
5.0 years ago
davide risso
▴ 950
0
votes
1
reply
2.2k
views
Comment:
C: Using RUVSeq RUVs() to perform batch correction using technical replicates
5.3 years ago
davide risso
▴ 950
0
votes
0
replies
2.3k
views
Comment:
C: normalized counts from RUVg run: is further library size normalization needed?
5.4 years ago
davide risso
▴ 950
1
vote
2
replies
1.6k
views
Answer:
A: How to best represent weights in SummarizedExperiment or SingleCellExperiment?
5.4 years ago
davide risso
▴ 950
1
vote
1
reply
1.3k
views
Answer:
A: How to remove samples from EDAseq SeqExpressionSeq
5.4 years ago
davide risso
▴ 950
0
votes
0
replies
2.3k
views
Comment:
C: normalized counts from RUVg run: is further library size normalization needed?
5.6 years ago
davide risso
▴ 950
0
votes
1
reply
2.3k
views
Comment:
C: normalized counts from RUVg run: is further library size normalization needed?
5.6 years ago
davide risso
▴ 950
0
votes
1
reply
2.7k
views
Comment:
C: EDASeq, RUVSeq and edgeR together
5.6 years ago
davide risso
▴ 950
0
votes
2
replies
2.3k
views
Answer:
A: normalized counts from RUVg run: is further library size normalization needed?
5.6 years ago
davide risso
▴ 950
0
votes
1
reply
2.0k
views
Answer:
A: determine k during RUVSeq
5.6 years ago
davide risso
▴ 950
0
votes
1
reply
2.7k
views
Comment:
C: EDASeq, RUVSeq and edgeR together
5.6 years ago
davide risso
▴ 950
0
votes
1
reply
2.7k
views
Comment:
C: EDASeq, RUVSeq and edgeR together
5.6 years ago
davide risso
▴ 950
3
votes
1
reply
1.4k
views
Answer:
A: nbinomLRT function all cores usage
5.6 years ago
davide risso
▴ 950
1
vote
1
reply
2.7k
views
Answer:
A: EDASeq, RUVSeq and edgeR together
5.7 years ago
davide risso
▴ 950
0
votes
0
replies
1.5k
views
Comment:
C: Global expression shift using RUVSeq
5.9 years ago
davide risso
▴ 950
1
vote
1
reply
1.5k
views
Answer:
A: Global expression shift using RUVSeq
5.9 years ago
davide risso
▴ 950
1
vote
1
reply
3.7k
views
Comment:
C: Merging RNAseq Datasets of Different Depths
5.9 years ago
davide risso
▴ 950
0
votes
0
replies
833
views
Comment:
C: meanVarPlot Ignores Sample Total Count Differences
6.0 years ago
davide risso
▴ 950
1
vote
0
replies
931
views
Answer:
A: Mean-Variance Plot for Normalised Counts
6.0 years ago
davide risso
▴ 950
1
vote
0
replies
23k
views
Comment:
C: use EDAseq normalized data as input of DESeq2
6.0 years ago
davide risso
▴ 950
1
vote
0
replies
23k
views
Comment:
C: use EDAseq normalized data as input of DESeq2
6.1 years ago
davide risso
▴ 950
0
votes
0
replies
23k
views
Answer:
A: use EDAseq normalized data as input of DESeq2
6.1 years ago
davide risso
▴ 950
1
vote
0
replies
2.1k
views
Answer:
A: Mean Expression Calculation scRNA-seq (All cells or only Expressed Cells)
6.1 years ago
davide risso
▴ 950
0
votes
0
replies
1.0k
views
Answer:
A: Workflow Perraudeau F1000 - Bioconductor workflow for scRNA-seq
6.2 years ago
davide risso
▴ 950
2
votes
0
replies
9.2k
views
Answer:
A: Error: In seq_len(ncol(assay)) : first element used of 'length.out' argument
6.3 years ago
davide risso
▴ 950
2
votes
1
reply
2.0k
views
Answer:
A: RUVg with differential transcript expression?
6.4 years ago
davide risso
▴ 950
5
votes
1
reply
3.2k
views
Answer:
A: Incorporating RUVSeq factors of unwanted variation in DESeq2 time course analysi
6.5 years ago
davide risso
▴ 950
1
vote
1
reply
2.4k
views
Answer:
A: getGeneLengthAndGCContent: "zero or more than one input sequence"
6.5 years ago
davide risso
▴ 950
0
votes
2
replies
2.4k
views
Comment:
C: getGeneLengthAndGCContent: "zero or more than one input sequence"
6.5 years ago
davide risso
▴ 950
1
vote
1
reply
3.0k
views
Comment:
C: Error and weird result of TCGAanalyze_Normalization function using the R package
6.5 years ago
davide risso
▴ 950
1
vote
2
replies
3.0k
views
Comment:
C: Error and weird result of TCGAanalyze_Normalization function using the R package
6.5 years ago
davide risso
▴ 950
1
vote
1
reply
3.0k
views
Comment:
C: Error and weird result of TCGAanalyze_Normalization function using the R package
6.5 years ago
davide risso
▴ 950
1
vote
1
reply
3.0k
views
Answer:
A: Error and weird result of TCGAanalyze_Normalization function using the R package
6.5 years ago
davide risso
▴ 950
1
vote
0
replies
1.5k
views
Answer:
A: Outputting batch-effect free normalized counts
6.6 years ago
davide risso
▴ 950
0
votes
1
reply
1.6k
views
Comment:
C: From RleList to RleArray
6.6 years ago
davide risso
▴ 950
7
votes
4
replies
1.6k
views
From RleList to RleArray
delayedarray
rlelist
rle
updated 6.6 years ago by
Peter Hickey
▴ 740 • written 6.6 years ago by
davide risso
▴ 950
132 results • Page
1 of 3
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