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Comment: Comment: Memory errors using read.bismark?
4 weeks ago • updated 28 days ago Peter Hickey ▴ 740
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Comment: Comment: Memory errors using read.bismark?
4 weeks ago Peter Hickey ▴ 740
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Answer: Answer: Memory errors using read.bismark?
4 weeks ago Peter Hickey ▴ 740
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244
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Comment: Comment: Reading huge bismark coverage files using bbseq::read.bismark
4 weeks ago Peter Hickey ▴ 740
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Answer: Answer: Reading huge bismark coverage files using bbseq::read.bismark
4 weeks ago Peter Hickey ▴ 740
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489
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Comment: Comment: Memory errors using read.bismark?
4 weeks ago Peter Hickey ▴ 740
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Answer: Answer: Memory errors using read.bismark?
5 weeks ago • updated 4 weeks ago Peter Hickey ▴ 740
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247
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Job: Bioinformatics Spatial Omics and Proteomics Postdoc (Research Officer / Senior Research Officer) at WEHI (Melbourne, Australia)
Proteomics JobPosting SingleCell Spatial SpatialExperiment
10 weeks ago Peter Hickey ▴ 740
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413
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Answer: Answer: plotUMAP Gene Set Faceted
3 months ago Peter Hickey ▴ 740
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557
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Answer: Answer: Trouble generating a dendrogram with colored gene modules using WGCNA for large
5 months ago Peter Hickey ▴ 740
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518
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Answer: Answer: Easiest way to convert read10xMolInfo data into a dataframe in R with gene label
5 months ago Peter Hickey ▴ 740
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518
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Comment: Comment: Easiest way to convert read10xMolInfo data into a dataframe in R with gene label
5 months ago Peter Hickey ▴ 740
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324
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Answer: Answer: SingleR Book Not Found
5 months ago Peter Hickey ▴ 740
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0
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1.2k
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Answer: Answer: error message when I use the bsseq read.bismark command to read a genome wide cy
8 months ago Peter Hickey ▴ 740
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1.2k
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Comment: Comment: error message when I use the bsseq read.bismark command to read a genome wide cy
9 months ago Peter Hickey ▴ 740
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5.6k
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Comment: Comment: scran ScoreMarkers throws a warning
11 months ago Peter Hickey ▴ 740
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0
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661
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Job: Bioinformatics Spatial Omics Postdoc (Research Officer / Senior Research Officer) at WEHI (Melbourne, Australia)
SpatialExperiment JobPosting
11 months ago Peter Hickey ▴ 740
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691
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Answer: Answer: Choosing the right lower limit for emptyDrops
12 months ago Peter Hickey ▴ 740
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647
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Job: Bioinformatics Research Assistant at WEHI (Melbourne, Australia)
JobPosting
12 months ago Peter Hickey ▴ 740
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2.0k
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Answer: Answer: Remove certain highly expressing cells from a SCE
12 months ago Peter Hickey ▴ 740
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750
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Answer: Answer: scRNAseq package and cell type annotations
14 months ago Peter Hickey ▴ 740
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714
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Comment: Comment: Single-cell differential expression analysis with multiple samples
14 months ago Peter Hickey ▴ 740
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1.4k
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Comment: Comment: Pseudo-bulk celltype comparison across conditions from multiple-sources
14 months ago Peter Hickey ▴ 740
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714
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Answer: Answer: Single-cell differential expression analysis with multiple samples
14 months ago Peter Hickey ▴ 740
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1.1k
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Comment: Comment: How to perform batch correction on scRNA-seq with confounding plate effects?
14 months ago Peter Hickey ▴ 740
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2
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1.3k
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News: Registrations are now open for BioC Asia 2022
Asia BioCAsia Conferences Events News
19 months ago • updated 18 months ago Peter Hickey ▴ 740
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1.3k
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Answer: Answer: Registrations are now open for BioC Asia 2022
18 months ago Peter Hickey ▴ 740
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2
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665
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News: Win 1 of 50 free virtual registrations to BioC Asia 2022 (Dec 1-2, 2022)
Asia BioCAsia Conferences Events BioC
written 18 months ago by ▴ 740
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1.3k
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Answer: Answer: Registrations are now open for BioC Asia 2022
19 months ago Peter Hickey ▴ 740
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973
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Comment: Comment: different stat and p values when filtering or not by lfc in DESeq2
20 months ago Peter Hickey ▴ 740
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1.9k
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Comment: Comment: read.bismark() ->Error in manager$availability[[as.character(result$node)]] <- T
20 months ago Peter Hickey ▴ 740
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1
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973
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Answer: Answer: different stat and p values when filtering or not by lfc in DESeq2
20 months ago Peter Hickey ▴ 740
1
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1
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1.9k
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Comment: Comment: read.bismark() ->Error in manager$availability[[as.character(result$node)]] <- T
20 months ago Peter Hickey ▴ 740
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0
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1.2k
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Answer: Answer: Extract only dataframes from AnnData objects
20 months ago Peter Hickey ▴ 740
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0
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2.4k
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Comment: Comment: `emptyDrops()` calling 'too many' non-empty droplets
21 months ago Peter Hickey ▴ 740
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0
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2.4k
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Comment: Comment: `emptyDrops()` calling 'too many' non-empty droplets
21 months ago Peter Hickey ▴ 740
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0
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2.4k
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Comment: Comment: `emptyDrops()` calling 'too many' non-empty droplets
21 months ago Peter Hickey ▴ 740
4
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5
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2.4k
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`emptyDrops()` calling 'too many' non-empty droplets
DropletUtils emptyDrops scRNA scRNAseq 10x
21 months ago Peter Hickey ▴ 740
2
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1
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1.7k
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Comment: Comment: scater runUMAP
2.1 years ago Peter Hickey ▴ 740
3
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1
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1.7k
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Answer: Answer: scater runUMAP
2.1 years ago Peter Hickey ▴ 740
1
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0
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1.8k
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Answer: Answer: Can we use 'SCT normalization' to find anchors and 'LogNormalize' for the integr
2.1 years ago Peter Hickey ▴ 740
2
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1
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1.2k
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Answer: Answer: scuttle:: librarySizeFactors returning non-finite values
2.2 years ago Peter Hickey ▴ 740
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0
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879
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News: BioC Asia Virtual Meeting, 1-4 November 2021
Workshop Asia BioCAsia Conference
2.7 years ago Peter Hickey ▴ 740
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1
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901
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Comment: Comment: what does " * " denote under the strand column of the GRanges object file outpu
2.9 years ago Peter Hickey ▴ 740
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1.2k
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Answer: Answer: Seurat: normalized data in the integrated assay
2.9 years ago Peter Hickey ▴ 740
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2
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1.1k
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Answer: Answer: Bioconductor Release AMI's
3.0 years ago Peter Hickey ▴ 740
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0
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5.0k
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Answer: Answer: Error in conversion of SCE object to Seurat Object.
3.0 years ago Peter Hickey ▴ 740
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1.2k
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Comment: Comment: Does hashedDrops support 'imbalanced' combinations of HTOs?
3.2 years ago Peter Hickey ▴ 740
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4
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1.2k
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Does hashedDrops support 'imbalanced' combinations of HTOs?
DropletUtils scRNAseq
updated 3.2 years ago by ★ 28k • written 3.2 years ago by ▴ 740
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1.1k
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Number of non-empty drops returned by emptyDrops() depends on value of test.ambience
DropletUtils emptyDrops 10x
updated 3.3 years ago by ★ 28k • written 3.3 years ago by ▴ 740
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