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140
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Dominance Index for Shotgun Metagenomics Data
microbiome
updated 14 days ago by ▴ 40 • written 15 days ago by ★ 1.5k
0
votes
0
replies
91
views
Exon-exon Junction Analysis for Variable-length Exons
Rsubread
17 days ago Dario Strbenac ★ 1.5k
2
votes
2
replies
210
views
Bluster and Varieties of Louvain Clulstering
bluster
updated 5 weeks ago by ★ 4.1k • written 5 weeks ago by ★ 1.5k
2
votes
1
reply
245
views
Existence of Bioconductor versus Seurat Software Ecosystems Quantitative Comparison
scran bluster scater scuttle
updated 6 weeks ago by ★ 4.1k • written 6 weeks ago by ★ 1.5k
3
votes
3
replies
395
views
plotUMAP Gene Set Faceted
scater
updated 3 months ago by ▴ 160 • written 3 months ago by ★ 1.5k
0
votes
0
replies
395
views
Comment: Comment: plotUMAP Gene Set Faceted
3 months ago Dario Strbenac ★ 1.5k
1
vote
1
reply
257
views
plotUMAP and ggplotly Cell IDs Display
scater
updated 3 months ago by ▴ 160 • written 3 months ago by ★ 1.5k
0
votes
0
replies
155
views
iSEE Difference Panel Missing
iSEEu
3 months ago Dario Strbenac ★ 1.5k
0
votes
0
replies
171
views
clusterSweep Warning k Capped
bluster
3 months ago Dario Strbenac ★ 1.5k
0
votes
0
replies
584
views
Comment: Comment: Merging of Human and Mouse SingleCellExperiment Objects Error
3 months ago Dario Strbenac ★ 1.5k
4
votes
6
replies
584
views
Merging of Human and Mouse SingleCellExperiment Objects Error
SingleCellExperiment
3 months ago Dario Strbenac ★ 1.5k
0
votes
0
replies
584
views
Comment: Comment: Merging of Human and Mouse SingleCellExperiment Objects Error
3 months ago Dario Strbenac ★ 1.5k
2
votes
1
reply
290
views
DataFrame Printing User Control
S4Vectors
updated 5 months ago by 16k • written 5 months ago by ★ 1.5k
3
votes
1
reply
690
views
read10xCounts for Cell Ranger 7 Output
DropletUtils
updated 6 months ago by ★ 4.1k • written 19 months ago by ★ 1.5k
5
votes
6
replies
661
views
DataFrame Construction With Non-standard Column
S4Vectors
updated 7 months ago by 16k • written 7 months ago by ★ 1.5k
2
votes
2
replies
1.5k
views
Matching Variants Between Two VCF Objects
VariantAnnotation
written 3.5 years ago by ★ 1.5k
0
votes
1
reply
582
views
scRNAseq Download Errors
scRNAseq
updated 12 months ago by 3.9k • written 12 months ago by ★ 1.5k
4
votes
4
replies
1.2k
views
Flank GenomicRanges on Both Sides
GenomicRanges
updated 15 months ago by 65k • written 16 months ago by ★ 1.5k
0
votes
0
replies
743
views
Comment: Comment: Successor of genesBy Defunct Function
15 months ago Dario Strbenac ★ 1.5k
0
votes
1
reply
1.2k
views
Comment: Comment: Flank GenomicRanges on Both Sides
15 months ago Dario Strbenac ★ 1.5k
2
votes
4
replies
743
views
Successor of genesBy Defunct Function
ensembldb
updated 15 months ago by 16k • written 16 months ago by ★ 1.5k
0
votes
0
replies
738
views
Answer: Answer: Is it possible to convert transcript-level to gene-level dataset to use it in DE
16 months ago Dario Strbenac ★ 1.5k
3
votes
3
replies
769
views
Subset and Assign MultiAssayExperiment
MultiAssayExperiment
updated 17 months ago by 690 • written 17 months ago by ★ 1.5k
2
votes
1
reply
687
views
Generalised Variant Annotator for GRIDSS2
StructuralVariantAnnotation
updated 2.0 years ago by ▴ 40 • written 2.1 years ago by ★ 1.5k
0
votes
1
reply
1.1k
views
Comment: Comment: Accession ID Conversion and Missing Results
2.8 years ago Dario Strbenac ★ 1.5k
2
votes
3
replies
1.1k
views
Accession ID Conversion and Missing Results
UniProt.ws
updated 2.8 years ago by 65k • written 2.8 years ago by ★ 1.5k
0
votes
0
replies
671
views
Arithmetic Operations Between GRanges' Scores
GenomicRanges
2.9 years ago Dario Strbenac ★ 1.5k
0
votes
0
replies
511
views
plotCopyNumberCallsAsLines Examples have Messy Text Overplotting
CopyNumberPlots
2.9 years ago Dario Strbenac ★ 1.5k
3
votes
2
replies
2.6k
views
Convert DataFrame to data.frame While Keeping Column Name Syntax
S4Vectors
updated 2.9 years ago by 65k • written 2.9 years ago by ★ 1.5k
2
votes
1
reply
888
views
DataFrame or DFrame
S4Vectors
updated 2.9 years ago by 690 • written 2.9 years ago by ★ 1.5k
0
votes
0
replies
997
views
Comment: Comment: MutationalPatterns Signature Database Versions
3.0 years ago Dario Strbenac ★ 1.5k
2
votes
2
replies
997
views
MutationalPatterns Signature Database Versions
MutationalPatterns
3.0 years ago Dario Strbenac ★ 1.5k
3
votes
1
reply
808
views
MultiAssayExperiment sampleMap Requirement for All Assays
MultiAssayExperiment
updated 3.0 years ago by 690 • written 3.0 years ago by ★ 1.5k
0
votes
1
reply
615
views
DegNorm Convergence Statuses
Convergence DegNorm
updated 3.0 years ago by ▴ 90 • written 3.0 years ago by ★ 1.5k
0
votes
0
replies
3.3k
views
Comment: Comment: lpsymphony compilation trouble
3.1 years ago Dario Strbenac ★ 1.5k
0
votes
0
replies
1.9k
views
Comment: Comment: threeUTRsByTranscript per GENE
3.2 years ago Dario Strbenac ★ 1.5k
2
votes
1
reply
3.1k
views
Convert UniProt Entry Names into Gene Symbols
Proteomics ProteomicsWorkflow UniProt.ws
updated 3.3 years ago by 65k • written 3.3 years ago by ★ 1.5k
4
votes
1
reply
1.4k
views
Changing Row Names of MultiAssayExperiment Assay
MultiAssayExperiment
updated 3.5 years ago by ▴ 100 • written 3.5 years ago by ★ 1.5k
0
votes
0
replies
2.4k
views
Comment: Comment: What lengths are used to calculate TPM in "scater" package
3.5 years ago Dario Strbenac ★ 1.5k
0
votes
0
replies
1.3k
views
Comment: C: Obtaining Comments From VCF Header
3.8 years ago Dario Strbenac ★ 1.5k
0
votes
0
replies
753
views
Expected Output for Promoters Used for GRangesList
GenomicRanges
3.8 years ago Dario Strbenac ★ 1.5k
2
votes
2
replies
1.3k
views
Obtaining Comments From VCF Header
VariantAnnotation VCFHeader
updated 3.9 years ago by 25k • written 3.9 years ago by ★ 1.5k
0
votes
0
replies
1.3k
views
Comment: C: Import or Subset VCF PASS Variants
4.1 years ago Dario Strbenac ★ 1.5k
3
votes
2
replies
1.3k
views
Import or Subset VCF PASS Variants
VariantAnnotation subset ScanVcfParam
updated 4.1 years ago by 25k • written 4.1 years ago by ★ 1.5k
0
votes
0
replies
1.8k
views
Comment: C: normalization methods for scRNA-seq and RNA-seq in specific cases of increased g
4.3 years ago Dario Strbenac ★ 1.5k
0
votes
1
reply
1.8k
views
Comment: C: normalization methods for scRNA-seq and RNA-seq in specific cases of increased g
4.3 years ago Dario Strbenac ★ 1.5k
0
votes
0
replies
1.8k
views
Comment: C: normalization methods for scRNA-seq and RNA-seq in specific cases of increased g
4.3 years ago Dario Strbenac ★ 1.5k
0
votes
2
replies
1.8k
views
Comment: C: normalization methods for scRNA-seq and RNA-seq in specific cases of increased g
4.3 years ago Dario Strbenac ★ 1.5k
2
votes
2
replies
640
views
Recommended Read Support Filter for Breakends
StructuralVariantAnnotation
updated 4.6 years ago by ▴ 40 • written 4.6 years ago by ★ 1.5k
1
vote
1
reply
2.5k
views
Answer: A: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
4.6 years ago Dario Strbenac ★ 1.5k
269 results • Page 1 of 6
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