jol.espinoz • 30
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Handle: @jolespinoz-11290
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Why is `scale-free topology` estimated as -sign(slope) * (R^2) in WGCNA?
Network StatisticalMethod WGCNA ExpressionData
4 days ago
jol.espinoz • 30
0
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0
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119
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Comment: Comment: P adjusted values in Deseq2
4 days ago
jol.espinoz • 30
15
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17
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10k
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WGCNA: What is `soft thresholding`?
wgcna network analysis network correlation coexpression
4.4 years ago
jol.espinoz • 30 • updated 6 weeks ago
Lluís Revilla Sancho • 610
1
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1
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156
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How to use ENCprime via coRdon with a custom background sequence set?
software codon usage bias dna
13 months ago
jol.espinoz • 30 • updated 13 months ago
anamaria • 10
1
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432
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dynamicTreeCut and WGCNA show clusters overlapping. Why is this?
dynamictreecut wgcna hierarchical clustering
2.3 years ago
jol.espinoz • 30
0
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0
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497
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Comment: C: [metagenomeSeq] "Error: Warning sample with one or zero features" from cumNormSt
2.7 years ago
jol.espinoz • 30
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1
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497
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[metagenomeSeq] "Error: Warning sample with one or zero features" from cumNormStatFast
metagenomeseq cumNormStatFast features error
2.7 years ago
jol.espinoz • 30
0
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0
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605
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How to interpret WGCNA's modulePreservation output when comparing 2 networks?
wgcna modules coexpression networks
2.9 years ago
jol.espinoz • 30
1
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1
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1.9k
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Cannot use Bioconductor with new conda R installation?
bioconductor biocinstaller installation conda
2.9 years ago
jol.espinoz • 30
1
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1.9k
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Answer: A: Cannot use Bioconductor with new conda R installation?
2.9 years ago
jol.espinoz • 30
2
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1
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508
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How to know which soft threshold to use for blockwise modules in WGCNA?
wgcna coexpression transcriptome
2.9 years ago
jol.espinoz • 30 • updated 2.9 years ago
Peter Langfelder ♦ 2.6k
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432
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What is the recommended method for running WGCNA on large metatranscriptomic dataset?
wgcna transcriptome big data metagenomics gene expression
2.9 years ago
jol.espinoz • 30
0
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1
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413
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Setting soft threshold when comparing 2 networks in WGCNA?
wgcna coexpression cooccurrence coabundance network
3.3 years ago
jol.espinoz • 30 • updated 3.2 years ago
Lluís Revilla Sancho • 610
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9.0k
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Comment: C: RNA-Seq, generate batch-free count matrix
3.5 years ago
jol.espinoz • 30
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1
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2.1k
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Comment: C: Can edgeR TMM normalization be used for other count data?
3.7 years ago
jol.espinoz • 30
6
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4
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2.1k
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Can edgeR TMM normalization be used for other count data?
edgeR tmm normalization counts
3.7 years ago
jol.espinoz • 30 • updated 3.7 years ago
James W. MacDonald 55k
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0
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1.2k
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Comment: C: pvclust and distance matrices
3.9 years ago
jol.espinoz • 30
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1.4k
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Comment: C: WGCNA | pickSoftThreshold.fromSimilarity not working for input similarity matrix
4.0 years ago
jol.espinoz • 30
4
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9
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1.4k
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WGCNA | pickSoftThreshold.fromSimilarity not working for input similarity matrix
WGCNA similarity correlation bioconductor rnaseq
4.0 years ago
jol.espinoz • 30 • updated 4.0 years ago
Peter Langfelder ♦ 2.6k
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1.5k
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Comment: C: WGCNA | Which module is reserved for outliers/unclustered genes?
4.0 years ago
jol.espinoz • 30
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0
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1.4k
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Comment: C: WGCNA | pickSoftThreshold.fromSimilarity not working for input similarity matrix
4.0 years ago
jol.espinoz • 30
0
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1
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1.4k
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Comment: C: WGCNA | pickSoftThreshold.fromSimilarity not working for input similarity matrix
4.0 years ago
jol.espinoz • 30
1
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2
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1.5k
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WGCNA | Which module is reserved for outliers/unclustered genes?
wgcna
4.0 years ago
jol.espinoz • 30 • updated 4.0 years ago
Lluís Revilla Sancho • 610
0
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0
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1.4k
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Comment: C: WGCNA | pickSoftThreshold.fromSimilarity not working for input similarity matrix
4.0 years ago
jol.espinoz • 30
0
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1
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1.4k
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Comment: C: WGCNA | pickSoftThreshold.fromSimilarity not working for input similarity matrix
4.0 years ago
jol.espinoz • 30
2
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2
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3.4k
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edgeR: How is FDR calculated for logFC? (False Discovery Rate)
edgeR bioconductor fdr statistics differential gene expression
4.1 years ago
jol.espinoz • 30
0
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3.4k
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Comment: C: edgeR: How is FDR calculated for logFC? (False Discovery Rate)
4.1 years ago
jol.espinoz • 30
0
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0
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10k
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Comment: C: WGCNA: What is `soft thresholding`?
4.3 years ago
jol.espinoz • 30
0
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2
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10k
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Comment: C: WGCNA: What is `soft thresholding`?
4.3 years ago
jol.espinoz • 30
0
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1
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10k
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Comment: C: WGCNA: What is `soft thresholding`?
4.3 years ago
jol.espinoz • 30
0
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1
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10k
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Comment: C: WGCNA: What is `soft thresholding`?
4.3 years ago
jol.espinoz • 30
0
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0
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10k
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Comment: C: WGCNA: What is `soft thresholding`?
4.3 years ago
jol.espinoz • 30
0
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2
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10k
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Comment: C: WGCNA: What is `soft thresholding`?
4.3 years ago
jol.espinoz • 30
0
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1
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2.1k
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Comment: C: source(biocLite.R) leads to this error >>> Peer certificate cannot be authentica
4.4 years ago
jol.espinoz • 30
0
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2
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2.1k
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Comment: C: source(biocLite.R) leads to this error >>> Peer certificate cannot be authentica
4.4 years ago
jol.espinoz • 30
0
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5
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2.1k
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source(biocLite.R) leads to this error >>> Peer certificate cannot be authenticated with given CA certificates
biocinstaller installation install source conda
4.4 years ago
jol.espinoz • 30 • updated 4.4 years ago
Martin Morgan 25k
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