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405 results • Page 1 of 9
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Answer: ashr vs apeglm for interaction data by Michael Love 36k
Can you show the MA plot for these two analyses? Also for a gene with a large LFC from ashr, can you show plotCounts?
Comment: Robust Multi-array Average could get negative value or not? by Yang Shi • 0
Got the point sir~ Thanks so much!
Comment: Robust Multi-array Average could get negative value or not? by James W. MacDonald 59k
Because it's a small number.
Comment: Robust Multi-array Average could get negative value or not? by Yang Shi • 0
Thanks for your quick reply sir! Could you tell me why 4 which you selected here?
Answer: Robust Multi-array Average could get negative value or not? by James W. MacDonald 59k
After running RMA, your data have been logged, base 2. Any value < 1 will have a negative value. Looking at the data from that GEO submissi…
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Answer: Robust Multi-array Average could get negative value or not?
Answer: Robust Multi-array Average could get negative value or not?
Answer: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
Answer: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
Answer: Print EnhancedVolcano Plot as jpeg or similar in R Notebook
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