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News:
Reminder: BioC2023, Awards, TAB Deadline approaching - May 31st!
Bioconductor
Community
BioC2023
1 day ago
Maria Doyle
▴ 20
1
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106
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News:
Last Week to Nominate for Bioc2023 Awards!
Bioconductor
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4 days ago
shepherl
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News:
Junior Developer or New Package Developer Award
Bioconductor
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Bioc2023
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15 days ago • updated 4 days ago
shepherl
3.5k
0
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0
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92
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News:
Bioconductor Community Engagement, Outreach, and Diversity Award
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Bioconductor
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4 weeks ago • updated 4 days ago
shepherl
3.5k
0
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98
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News:
Bioconductor Long-term Contribution Award
Bioc2023
Bioconductor
Awards
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25 days ago • updated 4 days ago
shepherl
3.5k
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110
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News:
Nominations for Bioconductor 2023 Awards!
Awards
Bioconductor
Bioc2023
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5 weeks ago • updated 4 days ago
shepherl
3.5k
0
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0
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45
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News:
course - single-cell RNAseq data analysis with R and Bioconductor
Workshop
scRNAseq
5 days ago
info
▴ 10
0
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463
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News:
Join the Technical Advisory Board
Bioconductor
News
Organization
19 days ago • updated 12 days ago
Maria Doyle
▴ 20
1
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8
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943
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News:
Final List of Deprecated Package Bioc 3.9
deprecation
release
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experimentData
News
written 4.2 years ago by
shepherl
3.5k
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72
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RNA-seq analysis with Bioconductor Carpentries workshop, Boston, Jul 31-Aug 1
Bioconductor
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23 days ago
Maria Doyle
▴ 20
0
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67
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News:
Include your Bioconductor tutorial in Smörgåsbord 2023, May 22-26!
Training
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4 weeks ago
Maria Doyle
▴ 20
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75
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News:
Bioconductor 3.17 is Released!
Packages
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4 weeks ago
shepherl
3.5k
1
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0
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66
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News:
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Training
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News
4 weeks ago
Maria Doyle
▴ 20
0
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1
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156
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News:
List of Deprecated Packages for Bioc3.17
Bioconductor
Deprecation
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devel
6 weeks ago • updated 4 weeks ago
shepherl
3.5k
1
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0
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171
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News:
Biological Data Science summer school 11-16 June in Brixen/Bressanone.
csama
5 weeks ago
Wolfgang Huber
13k
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0
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59
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News:
EuroBioC2023 abstract submission closing soon!
presentation
EuroBioc2023
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5 weeks ago
Maria Doyle
▴ 20
0
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0
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110
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News:
Bioconductor Release 3.16 Code Freeze
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Bioconductor
6 weeks ago
shepherl
3.5k
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0
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93
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9 weeks ago
kayla.interdonato
140
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1
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293
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News:
BioC2023 abstract submission is now open!
presentation
BioC2023
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updated 10 weeks ago by
cm162165
• 0 • written 3 months ago by
Maria Doyle
▴ 20
0
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0
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125
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News:
Bioconductor 3.17 Release Schedule
Softwar
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release
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10 weeks ago
shepherl
3.5k
3
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6
replies
421
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News:
Bioconductor will rename the default branch on `git.bioconductor.org` to `devel`
Software
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updated 9 weeks ago by
darrelvanhoy
• 0 • written 12 weeks ago by
shepherl
3.5k
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0
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91
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News:
EuroBioC2023 abstract submission is open!
presentation
EuroBioC2023
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community
Bioconductor
12 weeks ago
Maria Doyle
▴ 20
0
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0
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127
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News:
Course - R/BIOCONDUCTOR FOR MASS SPECTROMETRY AND PROTEOMICS
Proteomics
R
Bioconductor
MassSpectrometry
12 weeks ago
info
▴ 10
0
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0
replies
108
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Bioconductor call for events!
Bioconductor
events
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3 months ago
Maria Doyle
▴ 20
1
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0
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146
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News:
Ensembl 109 has been released
ensembldb
3 months ago
Aleena
▴ 20
1
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0
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293
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News:
Join the Community Advisory Board -- upcoming elections -- deadline Today
Bioconductor
CAB
bioconductoroversight
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5 months ago • updated 3 months ago
shepherl
3.5k
0
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0
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188
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News:
Seeking members for BioC2023 organizing committee
BioC2023
Bioconductor
community
4 months ago
Maria Doyle
▴ 20
0
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0
replies
157
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News:
Seeking Outreachy interns and project proposals
Bioconductor
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4 months ago
Maria Doyle
▴ 20
1
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0
replies
159
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News:
Virtual talk “Model Misspecification in Microbiome Studies” by Amy D Willis
MicrobiomeData
Microbiome
5 months ago
Levi Waldron
1.1k
3
votes
0
replies
492
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News:
Save the Date Bioc2023!
Bioc2023
Conference
Bioconductor
6 months ago
shepherl
3.5k
0
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1
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326
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News:
Bioconductor Scientific or Informatic Technology Advancement Award!
Recognition
Awards
Bioc2022
Bioconductor
written 13 months ago by
shepherl
3.5k
1
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2
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356
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News:
Ensembl 108 has been released!
biomaRt
ensembldb
ensembl
written 7 months ago by
Louisse
▴ 10
1
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2
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712
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News:
Registrations are now open for BioC Asia 2022
Asia
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News
8 months ago • updated 6 months ago
Peter Hickey
▴ 650
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217
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News:
Win 1 of 50 free virtual registrations to BioC Asia 2022 (Dec 1-2, 2022)
Asia
BioCAsia
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BioC
updated 5 months ago by
neckerchieffickle
• 0 • written 6 months ago by
Peter Hickey
▴ 650
1
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259
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News:
Bioconductor 3.16 is Released!
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6 months ago
shepherl
3.5k
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206
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News:
Bioconductor Carpentries instructor training
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6 months ago
Maria Doyle
▴ 20
0
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190
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News:
Last day to make commits before Release 3.16
Release
Devel
Bioconductor
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6 months ago
shepherl
3.5k
0
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396
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News:
European Bioconductor Conference 2023 planning
Europe
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EuroBioC
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News
7 months ago
Maria Doyle
▴ 20
0
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2
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326
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News:
List of Deprecated Packages for Bioc3.16
Release
Deprecation
Devel
Bioconductor
7 months ago
shepherl
3.5k
1
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1
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257
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Bioconductor Hacktoberfest meetups!
meetup
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7 months ago
Maria Doyle
▴ 20
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304
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Bioconductor Code of Conduct Committee Elections 2022
conduct
7 months ago
Laurent Gatto
1.6k
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0
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302
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News:
New Package Submission Deadline Tomorrow for Bioconductor 3.16
Release
Devel
Bioconductor
Software
7 months ago
shepherl
3.5k
0
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207
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News:
Bioconductor 3.16 db0s, OrgDbs and TxDbs now available
release
db0
annotation
8 months ago
kayla.interdonato
140
4
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290
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News:
Bioconductor Release 3.16 Schedule
Release
Devel
packages
release
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8 months ago
shepherl
3.5k
13
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3
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1.3k
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News:
Bioconductor teaching week
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Carpentries
written 9 months ago by
Laurent Gatto
1.6k
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394
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News:
Ensembl 107 has been released
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10 months ago
Aleena
▴ 20
0
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0
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408
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News:
Introduction to genomic data analysis with R and Bioconductor in Heidelberg, 12-13 September 2022
Workshop
10 months ago
Laurent Gatto
1.6k
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289
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News:
Translation Hackathon (community event) announcement
event
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10 months ago
kozo.nishida
• 0
1
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669
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News:
Nominations for Bioconductor 2022 Awards!
Bioc2022
Awards
Bioconductor
Recognition
updated 12 months ago by
anselmsara
• 0 • written 14 months ago by
shepherl
3.5k
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348
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News:
Bioc2022 In-person attendance lottery deadline this Sunday
Registration
Bioc2022
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12 months ago
shepherl
3.5k
451 results • Page
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Replies
Comment: Visualization of negative log CPM values
by
Gordon Smyth
47k
Sorry, but some of the things you say are not correct. > compound B has 2 statistically significant genes that are up-regulated No, there…
Comment: Visualization of negative log CPM values
by
ATpoint
★ 2.8k
Applies to both.
Comment: Visualization of negative log CPM values
by
Sabiha
▴ 10
@atpoint OK, are you referring to the `log2(cpm+1)` or `log2(tpm+1)`
Comment: Visualization of negative log CPM values
by
Sabiha
▴ 10
@gordonsmyth noted. Related to the graphs above, the table below is the output from `limma`, and compound B has 2 statistically significant…
Comment: Visualization of negative log CPM values
by
Gordon Smyth
47k
> negative scale might perhaps indicate gene is too low to be really expressed. Yes, negative logCPMs do mean that the gene is expressed a…
Votes
Comment: Visualization of negative log CPM values
Any efficient workaround to identify highly variable genes in Affymetrix microarray expression data?
Filtering low intensity probes in microarray data
Comment: Visualization of negative log CPM values
Adjusting for baseline when having longitudinal data, mixed model and no treatment
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