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Comment:
Comment: Time series DE gene analysis with edgeR where specific timepoints have NA levels
2.8 years ago
svlachavas
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1.6k
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Comment:
Comment: Time series DE gene analysis with edgeR where specific timepoints have NA levels
2.8 years ago
svlachavas
▴ 830
0
votes
1
reply
1.6k
views
Comment:
Comment: Time series DE gene analysis with edgeR where specific timepoints have NA levels
2.8 years ago
svlachavas
▴ 830
0
votes
1
reply
1.6k
views
Comment:
Comment: Time series DE gene analysis with edgeR where specific timepoints have NA levels
2.8 years ago
svlachavas
▴ 830
0
votes
0
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2.2k
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Comment:
Comment: Weird output of biomaRt R package querying Ensembl IDs (hg19/grch37) to retrieve
2.9 years ago
svlachavas
▴ 830
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2.2k
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Comment:
Comment: Weird output of biomaRt R package querying Ensembl IDs (hg19/grch37) to retrieve
2.9 years ago
svlachavas
▴ 830
0
votes
1
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2.2k
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Comment:
Comment: Weird output of biomaRt R package querying Ensembl IDs (hg19/grch37) to retrieve
2.9 years ago
svlachavas
▴ 830
0
votes
0
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3.2k
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Comment:
Comment: Issues with installation status of R package rtracklayer
3.3 years ago
svlachavas
▴ 830
1
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0
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1.8k
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Comment:
Comment: Error with R package curatedTCGAData while trying to download TCGA MultiAssayExp
3.4 years ago
svlachavas
▴ 830
0
votes
2
replies
1.8k
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Comment:
Comment: Error with R package curatedTCGAData while trying to download TCGA MultiAssayExp
3.4 years ago
svlachavas
▴ 830
0
votes
1
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1.2k
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Comment:
Comment: Error in MAE experiment regarding the replacement of internal assays with differ
3.4 years ago
svlachavas
▴ 830
0
votes
0
replies
2.3k
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Comment:
Comment: Transformation of raw RSEM gene expression estimates with variance stabilizing t
3.4 years ago
svlachavas
▴ 830
0
votes
1
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2.3k
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Comment:
Comment: Transformation of raw RSEM gene expression estimates with variance stabilizing t
3.4 years ago
svlachavas
▴ 830
0
votes
1
reply
2.3k
views
Comment:
Comment: Transformation of raw RSEM gene expression estimates with variance stabilizing t
3.4 years ago
svlachavas
▴ 830
0
votes
0
replies
2.8k
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Comment:
C: Converstion of Ranged Summarized Experiment to Data Frame
3.5 years ago
svlachavas
▴ 830
0
votes
1
reply
1.3k
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Comment:
C: Implementation of MultiAssayExperiment and curatedTCGAData R packages for querin
3.5 years ago
svlachavas
▴ 830
0
votes
0
replies
3.2k
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Comment:
C: Possible batch effect correction with RNA-Seq data when the batches do not conta
4.0 years ago
svlachavas
▴ 830
0
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1
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3.2k
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Comment:
C: Possible batch effect correction with RNA-Seq data when the batches do not conta
4.0 years ago
svlachavas
▴ 830
0
votes
0
replies
2.1k
views
Comment:
C: How to analyze pre-processed RNA-Seq data from GEO based on the deseq R package
4.1 years ago
svlachavas
▴ 830
0
votes
1
reply
2.1k
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Comment:
C: How to analyze pre-processed RNA-Seq data from GEO based on the deseq R package
4.1 years ago
svlachavas
▴ 830
0
votes
1
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1.2k
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Comment:
C: Annotation issue while analyzing processed Affymetrix Human Exon 1.0 ST Arrays f
4.1 years ago
svlachavas
▴ 830
0
votes
0
replies
1.2k
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Comment:
C: Annotation issue while analyzing processed Affymetrix Human Exon 1.0 ST Arrays f
4.1 years ago
svlachavas
▴ 830
0
votes
0
replies
1.3k
views
Comment:
C: Weird error in Rstudio trying to retreive and load genomic data from external da
4.2 years ago
svlachavas
▴ 830
0
votes
1
reply
1.3k
views
Comment:
C: Weird error in Rstudio trying to retreive and load genomic data from external da
4.2 years ago
svlachavas
▴ 830
0
votes
1
reply
1.1k
views
Comment:
C: Difference in dimensionality reduction plots based on DESeq2 R package and core
4.2 years ago
svlachavas
▴ 830
0
votes
1
reply
1.1k
views
Comment:
C: Difference in dimensionality reduction plots based on DESeq2 R package and core
4.2 years ago
svlachavas
▴ 830
0
votes
0
replies
1.2k
views
Comment:
C: Apply different cutoffs with edgeR pipeline and glmTreat for RNA-Seq DEG analysi
4.2 years ago
svlachavas
▴ 830
0
votes
0
replies
1.8k
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Comment:
C: Perform correlation analysis between miRNA and mRNA gene expression data on the
5.1 years ago
svlachavas
▴ 830
0
votes
1
reply
1.8k
views
Comment:
C: Perform correlation analysis between miRNA and mRNA gene expression data on the
5.1 years ago
svlachavas
▴ 830
0
votes
1
reply
1.2k
views
Comment:
C: Correct annotation R package for human clariom array analysis
5.1 years ago
svlachavas
▴ 830
0
votes
1
reply
1.2k
views
Comment:
C: Correct annotation R package for human clariom array analysis
5.1 years ago
svlachavas
▴ 830
0
votes
0
replies
1.9k
views
Comment:
C: Taking into account strong batch effect in microarray differential expression an
5.3 years ago
svlachavas
▴ 830
0
votes
1
reply
1.9k
views
Comment:
C: Taking into account strong batch effect in microarray differential expression an
5.3 years ago
svlachavas
▴ 830
0
votes
2
replies
1.9k
views
Comment:
C: Taking into account strong batch effect in microarray differential expression an
5.3 years ago
svlachavas
▴ 830
0
votes
1
reply
1.9k
views
Comment:
C: Taking into account strong batch effect in microarray differential expression an
5.3 years ago
svlachavas
▴ 830
0
votes
0
replies
1.3k
views
Comment:
C: Explanation of mroast results for specific biological processes and error with b
5.5 years ago
svlachavas
▴ 830
0
votes
0
replies
1.4k
views
Comment:
C: Perform limma based gene-set testing for a two-group comparison in a microarray
5.6 years ago
svlachavas
▴ 830
0
votes
0
replies
1.4k
views
Comment:
C: Perform limma based gene-set testing for a two-group comparison in a microarray
5.6 years ago
svlachavas
▴ 830
0
votes
1
reply
3.2k
views
Comment:
C: How to analyze correctly agilent two-colour microarray data from the ArrayExpres
5.6 years ago
svlachavas
▴ 830
1
vote
1
reply
3.2k
views
Comment:
C: How to analyze correctly agilent two-colour microarray data from the ArrayExpres
5.6 years ago
svlachavas
▴ 830
0
votes
1
reply
1.9k
views
Comment:
C: Help for Affymetrix HTA 2.0 [transcript (gene) version] annotation
5.6 years ago
svlachavas
▴ 830
0
votes
1
reply
1.8k
views
Comment:
C: Include and implement a new reference genome option in the R package BSgenome fo
5.7 years ago
svlachavas
▴ 830
0
votes
1
reply
1.8k
views
Comment:
C: Include and implement a new reference genome option in the R package BSgenome fo
5.7 years ago
svlachavas
▴ 830
0
votes
0
replies
1.3k
views
Comment:
C: Implementation of specific cpm filtering in RNA-Seq data described in a previous
5.8 years ago
svlachavas
▴ 830
0
votes
0
replies
1.3k
views
Comment:
C: Implementation of specific cpm filtering in RNA-Seq data described in a previous
5.8 years ago
svlachavas
▴ 830
0
votes
0
replies
2.9k
views
Comment:
C: Robust transformation of raw RNA-seq counts for exploratory data analysis and hi
5.8 years ago
svlachavas
▴ 830
0
votes
1
reply
2.9k
views
Comment:
C: Robust transformation of raw RNA-seq counts for exploratory data analysis and hi
5.8 years ago
svlachavas
▴ 830
0
votes
0
replies
2.5k
views
Comment:
C: Error with R package motifbreakR while trying to read a vcf file with snps.from.
5.8 years ago
svlachavas
▴ 830
0
votes
1
reply
2.5k
views
Comment:
C: Error with R package motifbreakR while trying to read a vcf file with snps.from.
5.8 years ago
svlachavas
▴ 830
0
votes
1
reply
1.9k
views
Comment:
C: Querying specific TCGA datasets through the MultiAssayExperiment R package
5.8 years ago
svlachavas
▴ 830
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