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6 years, 7 months ago
United States
Yeast org.Sc.sgd.db lacks SYMBOL - should it have one? - how to make it interoperate with clusterProfiler in its absence?
6 years, 10 months ago
United States
GenomicFeatures supportedUCSCFeatureDbTracks never returns and has to be terminated with C-c
7 years, 6 months ago
United States
emacs org mode html export using jQuery DataTables (WAS: new package for generating interactive HTML reports)
7 years, 7 months ago
United States
coercion to Granges from empty data.frame ==> unexpected behavior ??
8 years, 7 months ago
United States
HowTo: install just html help on top of existing packages
9 years, 1 month ago
United States
HowTo? Provide a different fill color for each rectangle in an Gviz AnnotationTrack ?
10 years, 5 months ago
United States
Is Bioconductor 3.0 compatible with R 3.1.2?
11 years, 7 months ago
United States
IRanges::Rle::[ arguably should return NA when i is out of range
11 years, 7 months ago
United States
subsetting SummarizedExperiments - a proposal (or a hack?)
11 years, 8 months ago
United States
subsetting SummarizedExperiments - a proposal (or a hack?)
11 years, 11 months ago
United States
autoplot transcriptDb error with some regions
12 years, 1 month ago
United States
BUG? when setting mcols of a GRanges to a DataFrame one of whose columns is an ordered factor
12 years, 7 months ago
United States
[Rd] enabling reproducible research & R package management & install.package.version & BiocLite
12 years, 7 months ago
United States
enabling reproducible research & R package management & install.package.version & BiocLite
13 years, 3 months ago
United States
[Engineers for ensemblgenomes.org #251937] BioMart data anomaly: for some transcripts, the cds cumulative length inferred from the exon and UTR info doesn't match the "cds_length"
13 years, 5 months ago
United States
rtracklayer proposal for ISSUE: import.gff3 asRangedData=FALSE fails when strand is '.'
13 years, 6 months ago
United States
[Hinxton #251937] RE: GenomicFeatures::makeTranscriptDbFromBiomart - BioMart data anomaly: for some transcripts, the cds cumulative length inferred from the exon and UTR info doesn
13 years, 8 months ago
United States
[Hinxton #251937] RE: GenomicFeatures::makeTranscriptDbFromBiomart - BioMart data anomaly: for some transcripts, the cds cumulative length inferred from the exon and UTR info doesn
13 years, 8 months ago
United States
BioMart data anomaly: for some transcripts, the cds cumulative length inferred from the exon and UTR info doesn't match the "cds_length" attribute from BioMart
13 years, 8 months ago
United States
GenomicFeatures::makeTranscriptDbFromBiomart - BioMart data anomaly: for some transcripts, the cds cumulative length inferred from the exon and UTR info doesn't match the "cds_leng
13 years, 8 months ago
United States
error "Too many pushAbortHandlers, can only handle 11" while exporting bedGraph/bigWig using rtracklayer from Bioconductor
13 years, 8 months ago
United States
FW: GenomicFeatures::makeTranscriptDbFromBiomart - Error in callSuper(...) : could not find function "initRefFields"
13 years, 8 months ago
United States
GenomicFeatures::makeTranscriptDbFromBiomart - Error in callSuper(...) : could not find function "initRefFields"
13 years, 9 months ago
United States
GenomicFeatures makeTranscriptDbFromBiomart failure
13 years, 9 months ago
United States
biomaRt access to ensemble genomes 11 fungi_mart_11
14 years ago
United States
HowTo: "Extract masked sequences" / "insert Ns for repeat masked regions"
14 years, 6 months ago
United States
Re(surrecting): [Bioc-sig-seq] Rsamtools countBam labeling
14 years, 7 months ago
United States
extending GenomicFeatures to makeTranscriptDbFrom other sources (i.e. GFF3)
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