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Created An Answer That Has Been Accepted
Awarded 5091 times (see all awards). Earned by the
following contributors:
6 years, 8 months ago
The city by the bay
A: TopTable vs DecideTests: can I just extract DEs with decidetest rowsums !=0?
6 years, 8 months ago
The city by the bay
A: Average read counts and batch-effect correction in edgeR
6 years, 8 months ago
The city by the bay
EdgeR - blocking for multiple factors at once - Errors
6 years, 8 months ago
The city by the bay
EdgeR - blocking for multiple factors at once - Errors
6 years, 8 months ago
The city by the bay
EdgeR - blocking for multiple factors at once - Errors
6 years, 8 months ago
The city by the bay
A: removing rows from SingleCellExperiment container
6 years, 8 months ago
The city by the bay
A: FDR does not change between genes in edgeR
6 years, 9 months ago
The city by the bay
A: Help analyzing RNA-seq data from FPKM values with multiple time points
6 years, 9 months ago
The city by the bay
A: Top variable features used by 'runPCA' in scater
6 years, 9 months ago
The city by the bay
A: edgeR DE analysis: single group combined factors or GLM with interaction term
6 years, 9 months ago
The city by the bay
EdgeR - blocking for multiple factors at once - Errors
6 years, 9 months ago
The city by the bay
applying voom + limma to a block factor design in RNA-seq experiment
6 years, 9 months ago
The city by the bay
Understanding and creating various comparisons with model.matrix in limma regarding microarrays
6 years, 9 months ago
The city by the bay
limma barcodeplot(): calculation of enrichment score
6 years, 10 months ago
The city by the bay
A: EdgeR - blocking for multiple factors at once - Errors
6 years, 10 months ago
The city by the bay
EdgeR - blocking for multiple factors at once - Errors
6 years, 10 months ago
The city by the bay
Understanding and creating various comparisons with model.matrix in limma regarding microarrays
6 years, 10 months ago
The city by the bay
limma barcodeplot(): calculation of enrichment score
6 years, 10 months ago
The city by the bay
applying voom + limma to a block factor design in RNA-seq experiment
6 years, 10 months ago
The city by the bay
A: Predict circadian expression with edgeR
6 years, 11 months ago
The city by the bay
A: Is it ok to use decideTests on linearly dependent contrasts?
6 years, 11 months ago
The city by the bay
A: limma barcodeplot(): calculation of enrichment score
6 years, 11 months ago
The city by the bay
applying voom + limma to a block factor design in RNA-seq experiment
6 years, 11 months ago
The city by the bay
limma barcodeplot(): calculation of enrichment score
7 years ago
The city by the bay
A: Correct formulation of contrasts of interest regarding an RNA-Seq gene expressio
7 years ago
The city by the bay
A: time series, block by patient, between and within comparisons limma-voom
7 years ago
The city by the bay
Problem with annotating ENSEMBLE IDs to GENE SYMBOL with AnnotationDBI mapIDs
7 years ago
The city by the bay
Building contrasts for combined treatment groups to compare to a control
7 years ago
The city by the bay
applying voom + limma to a block factor design in RNA-seq experiment
7 years, 1 month ago
The city by the bay
applying voom + limma to a block factor design in RNA-seq experiment
7 years, 1 month ago
The city by the bay
Building contrasts for combined treatment groups to compare to a control
7 years, 1 month ago
The city by the bay
Problem with annotating ENSEMBLE IDs to GENE SYMBOL with AnnotationDBI mapIDs
7 years, 1 month ago
The city by the bay
A: Adjust number of clusters with scran/buildSNNGraph
7 years, 2 months ago
The city by the bay
A: Cannot retrieve DE genes from goana GO terms
7 years, 2 months ago
The city by the bay
A: Limma trend test with pre/post design and technical replicates
7 years, 2 months ago
The city by the bay
A: SCRAN - Question: Error when calling cosineNorm through fastMNN
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