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Created An Answer That Has Been Accepted
Awarded 5103 times (see all awards). Earned by the
following contributors:
7 years ago
WEHI, Melbourne, Australia
Why different filtering criteria using CPM to filter the RNA-seq count data in edgeR have so much influence on the number of DE genes?
7 years ago
WEHI, Melbourne, Australia
Finding genes respond differently to treatment between many genotype comparison
7 years ago
WEHI, Melbourne, Australia
Performing differential gene analysis on RT PCR experimental data
7 years ago
WEHI, Melbourne, Australia
Array Normalization on focussed array in Limma using R
7 years ago
WEHI, Melbourne, Australia
Function kegga not working for species other than the conventional ones - Pathways do not overlap with universe
7 years ago
WEHI, Melbourne, Australia
How to find out the genes that changes in expression by using gene level expression data matrix?
7 years ago
WEHI, Melbourne, Australia
subread gives segfaults when supplied with falsely-identified paired end reads
7 years ago
WEHI, Melbourne, Australia
Using GOseq for custom gene set enrichment test
7 years ago
WEHI, Melbourne, Australia
How to add my own Entrez Gene IDs rather than using the ones from a default package?
7 years ago
WEHI, Melbourne, Australia
another contrast question - edgeR + scRNA-seq + timecourse
7 years ago
WEHI, Melbourne, Australia
Building linear model (age effect on gene expression)
7 years ago
WEHI, Melbourne, Australia
A: Am I on the right tracks with a 3 factor design in Limma?
7 years ago
WEHI, Melbourne, Australia
A: Array Normalization on focussed array in Limma using R
7 years ago
WEHI, Melbourne, Australia
A: FDR does not change between genes in edgeR
7 years, 1 month ago
WEHI, Melbourne, Australia
How barcode-plot enrichment is calculated?
7 years, 1 month ago
WEHI, Melbourne, Australia
A: Interpreting (potentially conflicting) mroast results
7 years, 1 month ago
WEHI, Melbourne, Australia
A: voom variance modeling: lowess curve fitting notation misunderstanding?
7 years, 2 months ago
WEHI, Melbourne, Australia
A: limma-voom duplicateCorrelation once or twice, difference?
7 years, 2 months ago
WEHI, Melbourne, Australia
A: Apply different cutoffs with edgeR pipeline and glmTreat for RNA-Seq DEG analysi
7 years, 2 months ago
WEHI, Melbourne, Australia
A: EdgeR User Guide: use of glmLRT vs glmQLF in oral carcinoma Case Study
7 years, 2 months ago
WEHI, Melbourne, Australia
How barcode-plot enrichment is calculated?
7 years, 2 months ago
WEHI, Melbourne, Australia
ANOVA-like test via treat() in limma
7 years, 2 months ago
WEHI, Melbourne, Australia
another contrast question - edgeR + scRNA-seq + timecourse
7 years, 3 months ago
WEHI, Melbourne, Australia
A: edgeR compilation error: with g++ 4.9.2 and R-5.0 on linux platform
7 years, 3 months ago
WEHI, Melbourne, Australia
A: Limma: Don't have .CEL Affymatrix Files.
7 years, 3 months ago
WEHI, Melbourne, Australia
A: Limma without eBayes, is it indistunguishable from Ordinary Least Square?
7 years, 3 months ago
WEHI, Melbourne, Australia
Building linear model (age effect on gene expression)
7 years, 3 months ago
WEHI, Melbourne, Australia
another contrast question - edgeR + scRNA-seq + timecourse
7 years, 3 months ago
WEHI, Melbourne, Australia
ANOVA-like test via treat() in limma
7 years, 3 months ago
WEHI, Melbourne, Australia
A: How to apply KEGG enrichment analysis to the overlap of multiple contrasts in MA
7 years, 4 months ago
WEHI, Melbourne, Australia
A: GSVA & Limma for DE of Gene Sets using NanoString Data
7 years, 4 months ago
WEHI, Melbourne, Australia
A: Pre-ranked camera gene set testing with edgeR results
7 years, 4 months ago
WEHI, Melbourne, Australia
A: Identifying correlation between two variables using Limma
7 years, 4 months ago
WEHI, Melbourne, Australia
ANOVA-like test via treat() in limma
7 years, 4 months ago
WEHI, Melbourne, Australia
another contrast question - edgeR + scRNA-seq + timecourse
7 years, 4 months ago
WEHI, Melbourne, Australia
Building linear model (age effect on gene expression)
7 years, 4 months ago
WEHI, Melbourne, Australia
Why different filtering criteria using CPM to filter the RNA-seq count data in edgeR have so much influence on the number of DE genes?
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