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following contributors:
6 years, 10 months ago
WEHI, Melbourne, Australia
Volcanoplot with limma - RAW P-values or Adj.P-Values
6 years, 10 months ago
WEHI, Melbourne, Australia
How do you obtain the R - squared value from the NB line produced in plotMeanVar ?
6 years, 10 months ago
WEHI, Melbourne, Australia
Making sense out of makeContrasts and using coefficents for contrasts
6 years, 10 months ago
WEHI, Melbourne, Australia
Conduct likelihood ratio tests for a variable that isn't explicitly defined by matrix.model
6 years, 10 months ago
WEHI, Melbourne, Australia
Removing continuous covariate effects in limma analysis
6 years, 10 months ago
WEHI, Melbourne, Australia
Why different filtering criteria using CPM to filter the RNA-seq count data in edgeR have so much influence on the number of DE genes?
6 years, 10 months ago
WEHI, Melbourne, Australia
Finding genes respond differently to treatment between many genotype comparison
6 years, 10 months ago
WEHI, Melbourne, Australia
Performing differential gene analysis on RT PCR experimental data
6 years, 10 months ago
WEHI, Melbourne, Australia
Array Normalization on focussed array in Limma using R
6 years, 10 months ago
WEHI, Melbourne, Australia
How barcode-plot enrichment is calculated?
6 years, 10 months ago
WEHI, Melbourne, Australia
barcodeplot how to increase the font size
6 years, 10 months ago
WEHI, Melbourne, Australia
ANOVA-like test via treat() in limma
6 years, 10 months ago
WEHI, Melbourne, Australia
How to add my own Entrez Gene IDs rather than using the ones from a default package?
6 years, 10 months ago
WEHI, Melbourne, Australia
Function kegga not working for species other than the conventional ones - Pathways do not overlap with universe
6 years, 10 months ago
WEHI, Melbourne, Australia
Limma import array layout GenePix files
6 years, 10 months ago
WEHI, Melbourne, Australia
another contrast question - edgeR + scRNA-seq + timecourse
6 years, 10 months ago
WEHI, Melbourne, Australia
MDS plotting within the limma/voom workflow
6 years, 10 months ago
WEHI, Melbourne, Australia
Building linear model (age effect on gene expression)
6 years, 10 months ago
WEHI, Melbourne, Australia
A: Am I on the right tracks with a 3 factor design in Limma?
6 years, 10 months ago
WEHI, Melbourne, Australia
A: Limma analysis, controlling for Donors.
6 years, 10 months ago
WEHI, Melbourne, Australia
How barcode-plot enrichment is calculated?
6 years, 10 months ago
WEHI, Melbourne, Australia
A: Array Normalization on focussed array in Limma using R
6 years, 10 months ago
WEHI, Melbourne, Australia
How barcode-plot enrichment is calculated?
6 years, 11 months ago
WEHI, Melbourne, Australia
A: FDR does not change between genes in edgeR
6 years, 12 months ago
WEHI, Melbourne, Australia
How barcode-plot enrichment is calculated?
6 years, 12 months ago
WEHI, Melbourne, Australia
A: Interpreting (potentially conflicting) mroast results
7 years ago
WEHI, Melbourne, Australia
A: voom variance modeling: lowess curve fitting notation misunderstanding?
7 years ago
WEHI, Melbourne, Australia
A: limma-voom duplicateCorrelation once or twice, difference?
7 years ago
WEHI, Melbourne, Australia
A: Apply different cutoffs with edgeR pipeline and glmTreat for RNA-Seq DEG analysi
7 years ago
WEHI, Melbourne, Australia
A: EdgeR User Guide: use of glmLRT vs glmQLF in oral carcinoma Case Study
7 years ago
WEHI, Melbourne, Australia
another contrast question - edgeR + scRNA-seq + timecourse
7 years, 1 month ago
WEHI, Melbourne, Australia
A: edgeR compilation error: with g++ 4.9.2 and R-5.0 on linux platform
7 years, 1 month ago
WEHI, Melbourne, Australia
A: Limma: Don't have .CEL Affymatrix Files.
7 years, 1 month ago
WEHI, Melbourne, Australia
A: Limma without eBayes, is it indistunguishable from Ordinary Least Square?
7 years, 1 month ago
WEHI, Melbourne, Australia
Building linear model (age effect on gene expression)
7 years, 1 month ago
WEHI, Melbourne, Australia
another contrast question - edgeR + scRNA-seq + timecourse
7 years, 1 month ago
WEHI, Melbourne, Australia
ANOVA-like test via treat() in limma
7 years, 2 months ago
WEHI, Melbourne, Australia
A: How to apply KEGG enrichment analysis to the overlap of multiple contrasts in MA
7 years, 2 months ago
WEHI, Melbourne, Australia
A: GSVA & Limma for DE of Gene Sets using NanoString Data
7 years, 2 months ago
WEHI, Melbourne, Australia
A: Pre-ranked camera gene set testing with edgeR results
7 years, 2 months ago
WEHI, Melbourne, Australia
A: Identifying correlation between two variables using Limma
7 years, 2 months ago
WEHI, Melbourne, Australia
ANOVA-like test via treat() in limma
7 years, 2 months ago
WEHI, Melbourne, Australia
Building linear model (age effect on gene expression)
7 years, 2 months ago
WEHI, Melbourne, Australia
another contrast question - edgeR + scRNA-seq + timecourse
7 years, 2 months ago
WEHI, Melbourne, Australia
Why different filtering criteria using CPM to filter the RNA-seq count data in edgeR have so much influence on the number of DE genes?
7 years, 3 months ago
WEHI, Melbourne, Australia
A: Does gene set statistics of the ROAST paper correspond to those implemented in t
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