Scholar
Created An Answer That Has Been Accepted
Awarded 4952 times (see all awards). Earned by the
following contributors:
5 years, 2 months ago
Scripps Research, La Jolla, CA
A: LIMMA dupcor() function time issue.
5 years, 3 months ago
Scripps Research, La Jolla, CA
Limma validity for only hundreds of genes/metabolites
5 years, 3 months ago
Scripps Research, La Jolla, CA
Finding DE genes from RNA-seq data
5 years, 7 months ago
Scripps Research, La Jolla, CA
Limma validity for only hundreds of genes/metabolites
5 years, 11 months ago
Scripps Research, La Jolla, CA
Limma validity for only hundreds of genes/metabolites
5 years, 11 months ago
Scripps Research, La Jolla, CA
Limma validity for only hundreds of genes/metabolites
6 years, 10 months ago
Scripps Research, La Jolla, CA
Duplicate Correlation with technical replicates
6 years, 10 months ago
Scripps Research, La Jolla, CA
Limma validity for only hundreds of genes/metabolites
6 years, 10 months ago
Scripps Research, La Jolla, CA
What's the relationship between "design" and "contrasts"?
6 years, 10 months ago
Scripps Research, La Jolla, CA
RNA-seq Normalisation - normalise all samples in experiment or only the ones used in the comparison?
6 years, 10 months ago
Scripps Research, La Jolla, CA
How does the function model.matrix (to define experimental design) really works ?
6 years, 11 months ago
Scripps Research, La Jolla, CA
What's the relationship between "design" and "contrasts"?
7 years, 1 month ago
Scripps Research, La Jolla, CA
What's the relationship between "design" and "contrasts"?
7 years, 1 month ago
Scripps Research, La Jolla, CA
What's the relationship between "design" and "contrasts"?
7 years, 1 month ago
Scripps Research, La Jolla, CA
What's the relationship between "design" and "contrasts"?
7 years, 1 month ago
Scripps Research, La Jolla, CA
What's the relationship between "design" and "contrasts"?
7 years, 9 months ago
Scripps Research, La Jolla, CA
A: What's the rationale for using the negative binomial distribution to model read
7 years, 10 months ago
Scripps Research, La Jolla, CA
A: Using multiple tools for differential gene expression analysis as validation
8 years ago
Scripps Research, La Jolla, CA
ribosome profiling analysis with different dispersions
8 years ago
Scripps Research, La Jolla, CA
Cannot find function treatDGE() in package edgeR?
8 years ago
Scripps Research, La Jolla, CA
nested modeling for unequal groups with edgeR
8 years ago
Scripps Research, La Jolla, CA
edger, trended or common dispersion
8 years ago
Scripps Research, La Jolla, CA
DESeq2 how to define my conditions when I want the results comparing a subset of samples
8 years ago
Scripps Research, La Jolla, CA
Technical and biological replates in BitSeq
8 years ago
Scripps Research, La Jolla, CA
normalized data by DESeq2 look suspicious
8 years ago
Scripps Research, La Jolla, CA
On the relationship between design and contrasts
8 years ago
Scripps Research, La Jolla, CA
Adjusting for confounders along with paired testing using edgeR
8 years ago
Scripps Research, La Jolla, CA
Duplicate Correlation with technical replicates
8 years ago
Scripps Research, La Jolla, CA
What's the relationship between "design" and "contrasts"?
8 years ago
Scripps Research, La Jolla, CA
A: High number of significant DE genes with low baseMean, is this abnormal?
8 years ago
Scripps Research, La Jolla, CA
normalized data by DESeq2 look suspicious
8 years, 4 months ago
Scripps Research, La Jolla, CA
normalized data by DESeq2 look suspicious
8 years, 4 months ago
Scripps Research, La Jolla, CA
A: edger, trended or common dispersion
8 years, 6 months ago
Scripps Research, La Jolla, CA
normalized data by DESeq2 look suspicious
8 years, 6 months ago
Scripps Research, La Jolla, CA
edgeR (3.10.2) contrast question for experimental factors combined as a group
8 years, 6 months ago
Scripps Research, La Jolla, CA
ribosome profiling analysis with different dispersions
8 years, 6 months ago
Scripps Research, La Jolla, CA
Cannot find function treatDGE() in package edgeR?
8 years, 6 months ago
Scripps Research, La Jolla, CA
Technical and biological replates in BitSeq
8 years, 6 months ago
Scripps Research, La Jolla, CA
A: batch effect : comBat or blocking in limma ?
8 years, 8 months ago
Scripps Research, La Jolla, CA
A: [DESeq2] normalization doesn't remove my mean-variance trend
8 years, 8 months ago
Scripps Research, La Jolla, CA
Cannot find function treatDGE() in package edgeR?
8 years, 10 months ago
Scripps Research, La Jolla, CA
Cannot find function treatDGE() in package edgeR?
9 years, 1 month ago
Scripps Research, La Jolla, CA
Cannot find function treatDGE() in package edgeR?
9 years, 1 month ago
Scripps Research, La Jolla, CA
Cannot find function treatDGE() in package edgeR?
9 years, 1 month ago
Scripps Research, La Jolla, CA
A: Cannot find function treatDGE() in package edgeR?
9 years, 2 months ago
Scripps Research, La Jolla, CA
summarizing shRNA data per gene with edgeR
9 years, 2 months ago
Scripps Research, La Jolla, CA
A: summarizing shRNA data per gene with edgeR
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6