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Created An Answer With At Least 3 Up-Votes
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following contributors:
6 years, 4 months ago
United States
A: Should I contrast 2 treatment groups using the control group as reference or dir
6 years, 4 months ago
United States
A: DESeq2 1.16.1 : Zero count values re-occurrence of issue 56191?
6 years, 4 months ago
United States
A: log fold change threshold in Deseq2 - using lfcthreshold
6 years, 6 months ago
United States
A: DESeq2 batch effect with and without interaction model
6 years, 6 months ago
United States
A: DESeq2 biais when genes are missing from the annotation?
6 years, 6 months ago
United States
A: Normalize to additional variable (brain weight) in DESeq2
6 years, 7 months ago
United States
A: Difference between heatmap using Euclidian distance and Poisson distance
6 years, 7 months ago
United States
A: DESeq2 contrast give different results for same comparison using standard analys
6 years, 7 months ago
United States
A: DESeq2 time series contrasts between timepoints
6 years, 8 months ago
United States
A: Interaction term - Model matrix not full rank
6 years, 8 months ago
United States
A: Biclustering Normalizing by Row in Heatmap of DESeq2
6 years, 9 months ago
United States
A: DESeq2 interaction term in two-factor design, which contrasts?
6 years, 10 months ago
United States
A: tximport error: all(names(aveLengthSampGene) == rownames(lengthMat)) is not TRUE
6 years, 10 months ago
United States
A: What to use: PCA or tSNE dimension reduction in DESeq2 analysis?
6 years, 10 months ago
United States
DESeq2 batch effect modeling and matrix not full rank
6 years, 10 months ago
United States
Are published RNA seq data analyses often wrong in calculating p-values and FDR?
6 years, 10 months ago
United States
DESeq2: add annotations (from data frame) to DESeqDataSet
6 years, 10 months ago
United States
Add new columns to DESeqResults from text file by matching rownames.
6 years, 10 months ago
United States
Is the VST implemented in DESeq useful on time-series cell differentiation datasets?
6 years, 10 months ago
United States
Convert Normalized RNA-Seq counts to TPM after Batch Correction
6 years, 10 months ago
United States
Analyzing RNA-Seq data without replicates using DESeq
6 years, 10 months ago
United States
How to get DESeq2 sizefactors from data imported using tximport
6 years, 10 months ago
United States
DESeq2 biais when genes are missing from the annotation?
6 years, 10 months ago
United States
DESeq2 batch effect with and without interaction model
6 years, 10 months ago
United States
DESeq2: multiple conditions design -- How to select subset comparisons from the DESeq object for PCA, ...
6 years, 10 months ago
United States
Confused in the usage of formula in DESeq or DESeq2
6 years, 10 months ago
United States
DESeq2: Applying different pre-filtering for DE and EDA/Visualization of RNASeq data
6 years, 10 months ago
United States
GC/length bias correction in gene expression quantification - Is CQN necessary if using Salmon --GCBias option?
6 years, 10 months ago
United States
How does DESeq2 handle zero counts in one condition?
6 years, 10 months ago
United States
What to use: PCA or tSNE dimension reduction in DESeq2 analysis?
6 years, 10 months ago
United States
Normalize to additional variable (brain weight) in DESeq2
6 years, 12 months ago
United States
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
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