Teacher
Created An Answer With At Least 3 Up-Votes
Awarded 2263 times (see all awards). Earned by the
following contributors:
8 years, 4 months ago
The city by the bay
A: Using duplicateCorrelation to handle replicate samples
8 years, 5 months ago
The city by the bay
A: Correct contrast for testing multi-level interaction effect in limma using combi
8 years, 6 months ago
The city by the bay
A: Dealing with (blood) contamination in RNA-seq data
8 years, 6 months ago
The city by the bay
A: Timecourse Differential expression with multiple factors
8 years, 6 months ago
The city by the bay
A: Using the ERCC spike as a normalization factor for a custom algorithm
8 years, 7 months ago
The city by the bay
A: (batch) corrections of RNA-seq data: integrating LIMMA and SVA
8 years, 7 months ago
The city by the bay
A: apply edgeR TMM normalization without converting data format into 'DGEList'
8 years, 7 months ago
The city by the bay
A: How to deal with low-depth RNA-Seq within DESeq2 or edgeR
8 years, 7 months ago
The city by the bay
Discrepancy in the output of decideTests (total not equal to sum of up/down genes)
8 years, 7 months ago
The city by the bay
A: Which is the best design matrix to compare a timecourse between two conditions?
8 years, 7 months ago
The city by the bay
Discrepancy in the output of decideTests (total not equal to sum of up/down genes)
8 years, 7 months ago
The city by the bay
Discrepancy in the output of decideTests (total not equal to sum of up/down genes)
8 years, 7 months ago
The city by the bay
Discrepancy in the output of decideTests (total not equal to sum of up/down genes)
8 years, 8 months ago
The city by the bay
A: One replicate (one-color OR two-color) is enough to use Limma?
8 years, 8 months ago
The city by the bay
A: edgeR quasi-likelihood dispersion estimates
8 years, 9 months ago
The city by the bay
A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen
8 years, 10 months ago
The city by the bay
A: edgeR: Tagwise dispersion when using offset matrix
8 years, 10 months ago
The city by the bay
A: Discrepancy in the output of decideTests (total not equal to sum of up/down gene
8 years, 11 months ago
The city by the bay
A: duplicateCorrelation and Pearson Correlation
8 years, 11 months ago
The city by the bay
A: Limma, remove batch effects and technical replicates
9 years ago
The city by the bay
A: Correlation analysis taking into account multiple correlations
9 years ago
The city by the bay
A: Error when calculating DE using the classical approach in edgeR
9 years ago
The city by the bay
A: ROAST after edgeR glmTreat and average RPKM filter
9 years ago
The city by the bay
A: EdgeR glmLRT vs glmQL - hundreds of DE genes with glmLRT, almost none with glmQL
9 years ago
The city by the bay
A: Disagreement between TMM (edgeR) and RLE (DESeq) normalisation for single-cell d
9 years ago
The city by the bay
A: design and contrast matrix for RNA seq analysis with three different controls
9 years, 1 month ago
The city by the bay
A: Mutation effect on expression (RNA-Seq) using limma
9 years, 2 months ago
The city by the bay
A: Limma contrast for variables disease, gender and age
9 years, 2 months ago
The city by the bay
A: Is it valid to use only genes of interest before eBayes step in limma?
9 years, 3 months ago
The city by the bay
A: Possible implementation of multifactorial contrasts in limma regarding a microar
9 years, 3 months ago
The city by the bay
A: LIMMA: interpreting interaction terms in an unbalanced factorial design with rep
9 years, 3 months ago
The city by the bay
A: Can featurecounts count number of mapped reads rapidly in arbitrary regions?
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6