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Created An Answer With At Least 3 Up-Votes
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following contributors:
10 years ago
The city by the bay
A: Limma : design and contrast for a timecourse experiment with 2 cell lines
10 years, 1 month ago
The city by the bay
A: Batch with only one sample or condition
10 years, 1 month ago
The city by the bay
Possible implementation of multifactorial contrasts in limma regarding a microarray dataset
10 years, 1 month ago
The city by the bay
Possible implementation of multifactorial contrasts in limma regarding a microarray dataset
10 years, 1 month ago
The city by the bay
A: DESeq and Limma+Voom Normalization for Rna-Seq Data Using Ercc Spike-In
10 years, 2 months ago
The city by the bay
Possible implementation of multifactorial contrasts in limma regarding a microarray dataset
10 years, 2 months ago
The city by the bay
A: Help with design matrix for two cell types, multiple treatments
10 years, 2 months ago
The city by the bay
Possible implementation of multifactorial contrasts in limma regarding a microarray dataset
10 years, 2 months ago
The city by the bay
Possible implementation of multifactorial contrasts in limma regarding a microarray dataset
10 years, 2 months ago
The city by the bay
A: getting a list of probe IDs from topTable (limma version 3.18.13)
10 years, 2 months ago
The city by the bay
A: Limma get all DE genes or filter by logFC
10 years, 2 months ago
The city by the bay
Possible implementation of multifactorial contrasts in limma regarding a microarray dataset
10 years, 2 months ago
The city by the bay
Possible implementation of multifactorial contrasts in limma regarding a microarray dataset
10 years, 2 months ago
The city by the bay
limma Time Course Experiment with many time points
10 years, 2 months ago
The city by the bay
A: Limma model for 4 factor (2*2*2*2) design to detect the factor specific effect a
10 years, 2 months ago
The city by the bay
modeling zero-dominated RNA-seq with voom/limma and hurdle models (pscl)
10 years, 2 months ago
The city by the bay
A: Csaw : filter windows based on matched negative control
10 years, 2 months ago
The city by the bay
A: EdgeR - RNA-Seq time course analysis - Testing main and interaction effects and
10 years, 2 months ago
The city by the bay
A: Calculating contrasts for continuous variable anad interaction effect in Limma
10 years, 3 months ago
The city by the bay
modeling zero-dominated RNA-seq with voom/limma and hurdle models (pscl)
10 years, 3 months ago
The city by the bay
LIMMA: interpreting interaction terms in an unbalanced factorial design with repeated measures
10 years, 3 months ago
The city by the bay
what conditions affect my gene (with limma?)
10 years, 3 months ago
The city by the bay
Obtaining Differentially expressed gene lists at a Fold change and FDR cut-off
10 years, 3 months ago
The city by the bay
edgeR time series analysis with no replicates
10 years, 3 months ago
The city by the bay
Finding DE genes across any condition with Limma
10 years, 3 months ago
The city by the bay
Support for offsets in cpm and voom functions?
10 years, 3 months ago
The city by the bay
limma voom accessing normalised counts tables
10 years, 3 months ago
The city by the bay
Correct construction of design matrix in limma for multiple contrasts for gene expression profiling
10 years, 3 months ago
The city by the bay
A: Using edgeR or DESeq2 to analyze allele-specific expression?
10 years, 3 months ago
The city by the bay
A: Limma: Continuous variable model designs
10 years, 3 months ago
The city by the bay
A: design matrix for cross-over + repeated measures in limma?
10 years, 3 months ago
The city by the bay
A: Differential expression analysis: Continuous variable
10 years, 3 months ago
The city by the bay
A: edgeR/Deseq2 for differential OTU abundance in a mock 16s community?
10 years, 4 months ago
The city by the bay
A: edgeR time series analysis with no replicates
10 years, 4 months ago
The city by the bay
A: modeling zero-dominated RNA-seq with voom/limma and hurdle models (pscl)
10 years, 4 months ago
The city by the bay
A: limma p-value and adjusted p-value meaning
10 years, 4 months ago
The city by the bay
A: Finding DE genes across any condition with Limma
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