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Created An Answer With At Least 3 Up-Votes
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following contributors:
10 years, 5 months ago
The city by the bay
A: Independent filtering with unequal group sizes?
10 years, 6 months ago
The city by the bay
A: How to make contrast table to combine two conditions/treatments against another
10 years, 6 months ago
The city by the bay
Obtaining Differentially expressed gene lists at a Fold change and FDR cut-off
10 years, 6 months ago
The city by the bay
A: Limma on Methylation Data - Fold Change Question
10 years, 6 months ago
The city by the bay
Obtaining Differentially expressed gene lists at a Fold change and FDR cut-off
10 years, 6 months ago
The city by the bay
A: Limma different sample size of groups and adjustment
10 years, 6 months ago
The city by the bay
A: Limma contrast matrix question/concern
10 years, 6 months ago
The city by the bay
Obtaining Differentially expressed gene lists at a Fold change and FDR cut-off
10 years, 7 months ago
The city by the bay
A: Design and contrast question limma (additive or nested or duplicateCorrelation()
10 years, 7 months ago
The city by the bay
Obtaining Differentially expressed gene lists at a Fold change and FDR cut-off
10 years, 7 months ago
The city by the bay
Obtaining Differentially expressed gene lists at a Fold change and FDR cut-off
10 years, 7 months ago
The city by the bay
Obtaining Differentially expressed gene lists at a Fold change and FDR cut-off
10 years, 7 months ago
The city by the bay
A: Correct construction of design matrix in limma for multiple contrasts for gene e
10 years, 8 months ago
The city by the bay
Obtaining Differentially expressed gene lists at a Fold change and FDR cut-off
10 years, 8 months ago
The city by the bay
A: edgeR: glmLRT equivalence between tests with cell means model and factor levels
10 years, 8 months ago
The city by the bay
A: Possible implementation of roast/mroast for testing common DE patterns across tw
10 years, 8 months ago
The city by the bay
Obtaining Differentially expressed gene lists at a Fold change and FDR cut-off
10 years, 9 months ago
The city by the bay
Obtaining Differentially expressed gene lists at a Fold change and FDR cut-off
10 years, 10 months ago
The city by the bay
A: Appropriate use of the function treat of the limma package
10 years, 10 months ago
The city by the bay
Obtaining Differentially expressed gene lists at a Fold change and FDR cut-off
10 years, 10 months ago
The city by the bay
A: Queries regarding normalization methods for RNA sequencing data analysis
10 years, 10 months ago
The city by the bay
Obtaining Differentially expressed gene lists at a Fold change and FDR cut-off
10 years, 11 months ago
The city by the bay
Obtaining Differentially expressed gene lists at a Fold change and FDR cut-off
10 years, 11 months ago
The city by the bay
A: summarizing shRNA data per gene with edgeR
10 years, 11 months ago
The city by the bay
A: extract similar expressed genes (SEGs) rather than DEGs
11 years ago
The city by the bay
Obtaining Differentially expressed gene lists at a Fold change and FDR cut-off
11 years, 2 months ago
The city by the bay
Obtaining Differentially expressed gene lists at a Fold change and FDR cut-off
11 years, 2 months ago
The city by the bay
A: limma voom accessing normalised counts tables
11 years, 2 months ago
The city by the bay
Obtaining Differentially expressed gene lists at a Fold change and FDR cut-off
11 years, 2 months ago
The city by the bay
Obtaining Differentially expressed gene lists at a Fold change and FDR cut-off
11 years, 3 months ago
The city by the bay
How to use dispersion estimated from one dataset in another dataset in EdgeR
11 years, 3 months ago
The city by the bay
A: How to use dispersion estimated from one dataset in another dataset in EdgeR
11 years, 3 months ago
The city by the bay
what causes the difference in the topTable results by the two analyses using limma?
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