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Created An Answer With At Least 3 Up-Votes
Awarded 2207 times (see all awards). Earned by the
following contributors:
5 years, 3 months ago
Scripps Research, La Jolla, CA
[Limma] Testing continuous variable with interaction
5 years, 3 months ago
Scripps Research, La Jolla, CA
Voom transformation from counts and normalization to negative values
5 years, 3 months ago
Scripps Research, La Jolla, CA
Finding DE genes from RNA-seq data
5 years, 3 months ago
Scripps Research, La Jolla, CA
What's the relationship between "design" and "contrasts"?
5 years, 3 months ago
Scripps Research, La Jolla, CA
Correct assumptions of using limma moderated t-test
5 years, 7 months ago
Scripps Research, La Jolla, CA
Voom transformation from counts and normalization to negative values
5 years, 7 months ago
Scripps Research, La Jolla, CA
Voom transformation from counts and normalization to negative values
5 years, 8 months ago
Scripps Research, La Jolla, CA
What's the relationship between "design" and "contrasts"?
5 years, 11 months ago
Scripps Research, La Jolla, CA
RNA-seq Normalisation - normalise all samples in experiment or only the ones used in the comparison?
5 years, 11 months ago
Scripps Research, La Jolla, CA
What's the relationship between "design" and "contrasts"?
5 years, 11 months ago
Scripps Research, La Jolla, CA
What's the relationship between "design" and "contrasts"?
6 years ago
Scripps Research, La Jolla, CA
A: Repeated Measures, Within-Subject, Between-Groups RNAseq Analysis
6 years, 1 month ago
Scripps Research, La Jolla, CA
A: Fitting Gamma GLMs for examining differential expression
6 years, 7 months ago
Scripps Research, La Jolla, CA
A: removeBatchEffect options: design and covariates
6 years, 10 months ago
Scripps Research, La Jolla, CA
ribosome profiling analysis with different dispersions
6 years, 10 months ago
Scripps Research, La Jolla, CA
edger glmQLFit mix glmLRT
6 years, 10 months ago
Scripps Research, La Jolla, CA
How does the function model.matrix (to define experimental design) really works ?
6 years, 10 months ago
Scripps Research, La Jolla, CA
RNA-seq Normalisation - normalise all samples in experiment or only the ones used in the comparison?
6 years, 10 months ago
Scripps Research, La Jolla, CA
What's the relationship between "design" and "contrasts"?
6 years, 10 months ago
Scripps Research, La Jolla, CA
What's the relationship between "design" and "contrasts"?
6 years, 10 months ago
Scripps Research, La Jolla, CA
A: limma: same data in different formats produces different DEG-analysis results
6 years, 10 months ago
Scripps Research, La Jolla, CA
What's the relationship between "design" and "contrasts"?
6 years, 11 months ago
Scripps Research, La Jolla, CA
What's the relationship between "design" and "contrasts"?
7 years, 1 month ago
Scripps Research, La Jolla, CA
What's the relationship between "design" and "contrasts"?
7 years, 1 month ago
Scripps Research, La Jolla, CA
What's the relationship between "design" and "contrasts"?
7 years, 2 months ago
Scripps Research, La Jolla, CA
What's the relationship between "design" and "contrasts"?
7 years, 3 months ago
Scripps Research, La Jolla, CA
A: What's the relationship between "design" and "contrasts"?
7 years, 5 months ago
Scripps Research, La Jolla, CA
A: edgeR RNA-seq analysis using glm
7 years, 6 months ago
Scripps Research, La Jolla, CA
A: DE for genes with very low counts using limma.
7 years, 7 months ago
Scripps Research, La Jolla, CA
A: [Limma] Testing continuous variable with interaction
8 years ago
Scripps Research, La Jolla, CA
Ribosome profiling analysis in DEseq2/limma
8 years ago
Scripps Research, La Jolla, CA
What's the relationship between "design" and "contrasts"?
8 years ago
Scripps Research, La Jolla, CA
Accounting for 5'/3' Bias in DESeq 2
8 years ago
Scripps Research, La Jolla, CA
DESeq2 how to define my conditions when I want the results comparing a subset of samples
8 years ago
Scripps Research, La Jolla, CA
edger, trended or common dispersion
8 years ago
Scripps Research, La Jolla, CA
Usability of ERCC spike-ins in standard RNAseq experiments
8 years ago
Scripps Research, La Jolla, CA
Using multiple tools for differential gene expression analysis as validation
8 years ago
Scripps Research, La Jolla, CA
Low percentage of assigned fragments with FeatureCounts
8 years ago
Scripps Research, La Jolla, CA
On the relationship between design and contrasts
8 years ago
Scripps Research, La Jolla, CA
DE for genes with very low counts using limma.
8 years ago
Scripps Research, La Jolla, CA
How to use removeBatchEffect for removing effect of multiple confounding variables
8 years, 4 months ago
Scripps Research, La Jolla, CA
FDR and padj in deseq and edger
8 years, 5 months ago
Scripps Research, La Jolla, CA
FDR and padj in deseq and edger
8 years, 5 months ago
Scripps Research, La Jolla, CA
FDR and padj in deseq and edger
8 years, 5 months ago
Scripps Research, La Jolla, CA
Correct assumptions of using limma moderated t-test
8 years, 6 months ago
Scripps Research, La Jolla, CA
Correct assumptions of using limma moderated t-test
8 years, 6 months ago
Scripps Research, La Jolla, CA
EdgeR Multifactorial design with batch effect-trouble with defining contrasts
8 years, 10 months ago
Scripps Research, La Jolla, CA
EdgeR Multifactorial design with batch effect-trouble with defining contrasts
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