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Paquet, Agnes
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@paquet-agnes-807
Last seen 10.3 years ago
Hi Saurin,
>From the example code you gave, you are generating your html page
using the function table2html, which is in the package marray, not
GOstats. By default, this function will create a link to annotations
provided by the Functional Genomics Core Facility at UCSF for any
column name in your data matrix containing "ID". These annotations are
provided for Operon and MEEBO oligonucleotides only. This script does
not take Gene Ontology identifiers (e.g. GO:xxxxxx) as argument, which
explains why you are getting a weird link.
To avoid this problem, you need to set up the correct URL mapping
using the function mapGeneInfo. If you don't want to create any link
for your GO ID column, you can use something like:
mymap <- maGeneInfo(ID="none")
table2html(GOtable, file="myFile.html",map=mymap,disp="file")
More details about these functions can be found in the corresponding
help files.
Best,
Agnes