subsetting PWMLognBackground object in the PWMEnrich package
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@amandajoyprice-13308
Last seen 6.2 years ago

Hello,

I'd like to subset the PWMLogn.hg19.MotifDb.Hsap object provided in PWMEnrich.Hsapiens.background package used by the PWMEnrich package to a selected list of PWMs. I see there is a page in the PWMEnrich manual about this but it looks to be missing a function. How should I go about doing this?

Thanks!

Amanda 

PWMEnrich • 790 views
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@amandajoyprice-13308
Last seen 6.2 years ago

Just wanted to follow up on my own question here with the answer (blame it on lack of sleep):

library(PWMEnrich.Hsapiens.background)

data(MotifDb.Hsap)

subset = MotifDb.Hsap[grep("CTCF", names(MotifDb.Hsap))]

 

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