AnnBuilder: use local gene2accession file
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@andrej-kastrin-1515
Last seen 9.7 years ago
Always when I execute the ABpkgBuilder command, BioC try to download the whole "gene2accession" file from ncbi server. I try to modify "myScrUrls" and "myOtherSrc" but without success. Any suggestion? Thanks a lot, Andrej
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John Zhang ★ 2.9k
@john-zhang-6
Last seen 9.7 years ago
>Always when I execute the ABpkgBuilder command, BioC try to download the >whole "gene2accession" file from ncbi server. I try to modify >"myScrUrls" and "myOtherSrc" but without success. Any suggestion? You also need to set fromWeb = FALSE to use files locally. But make sure your local files have the same name as that used by Entrez Gene. > >Thanks a lot, Andrej > >_______________________________________________ >Bioconductor mailing list >Bioconductor at stat.math.ethz.ch >https://stat.ethz.ch/mailman/listinfo/bioconductor Jianhua Zhang Department of Medical Oncology Dana-Farber Cancer Institute 44 Binney Street Boston, MA 02115-6084
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