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Hi Toni, First, your R is version 2.1.0 which is out-of-dated. Please update it to the latest version, 2.2.0. Second, one suggestion I gave to Anja regarding to the post on Dec 7 is removing the argument "srcUrls=mySrcUrls" because AnnBuilder will do this for you automatically. Third, you have a typo in the argument "author". It should be author=list(authors="Toni Juli", maintainer="Toni Juli <ajulia[at]vhebron.net>") See the typo? (There could be more than one author for a package.) If this is a typo somewhere in the examples/vignettes, please let me know and I will fix them in the next release. HTH, Ting-Yuan ______________________________________ Ting-Yuan Liu Program in Computational Biology Division of Public Health Sciences Fred Hutchinson Cancer Research Center Seattle, WA, USA ______________________________________ On Mon, 19 Dec 2005, Toni Juli? wrote: > Hi, > > Ive been trying to create an annotation package using AnnBuilder but an > error keeps appearing: > > Warning message: > Built for UCSC is not valid! in: getUCSCBuilt(organism) > Error in loadFromUrl(srcUrls[i]) : URL > ftp://ftp.ncbi.nih.gov/repository/UniGene/Homo_sapiens/Hs.data.gz is > incorrect or the target site is not responding! > > On Wed, 7 Dec 2005, Anja Schiel also posted the same problem using mouse > annotation. At that time the unavailability of the Unigene site was the > problem but in this case the URL can be directly accessed with no problem. > My ABPkgBuilder function and system info are: > > mySrcUrls <- getSrcUrl("all", "Homo sapiens") > > ABPkgBuilder(baseName = myBase, baseMapType = myBaseType, srcUrls = > mySrcUrls, pkgName = "Human.annot" , pkgPath = mydir, organism ="Homo > sapiens", version = "1.1.0", author = list(author= "Toni Juli", maintainer > = "ajulia[AT]vhebron.net"), fromWeb=T) > > > sessionInfo() > R version 2.1.0, 2005-04-18, i386-pc-mingw32 > > attached base packages: > [1] "tools" "methods" "stats" "graphics" "grDevices" "utils" > [7] "datasets" "base" > > other attached packages: > GO AnnBuilder annotate XML Biobase > "1.8.2" "1.8.0" "1.5.16" "0.97-8" "1.5.12" > > > What could be going wrong? > > Thanks for your help! > > > Toni > > > > > Antonio Juli > Unitat de Recerca de Reumatologia (URR) > Hospital Universitari Vall d'Hebron > Pg Vall d'Hebron, 119-129 > 08035, Barcelona, SPAIN > Tel: + 34 93 274 6200 > e-mail: ajulia at vhebron.net > > > [[alternative HTML version deleted]] > >