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Thomas, There is a list here: http://ihome.cuhk.edu.hk/~b400559/arraysoft_database.html http://ihome.cuhk.edu.hk/~b400559/arraysoft_public.html Also, GMOD has an expression component. Finally, have you looked at maDB (the bioconductor package)? Sean On 2/1/06 10:49 AM, "Thomas Litman" <thl at="" exiqon.com=""> wrote: > I would like to setup a microarray management system and database for spotted > ararys. Is there any particular software (either public domain or commercial) > that you would recommend? > Thank you very much for your advice > > - Thomas Litman, Ph.D. > > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor

Dear Dr. Litman, Here is MUSC DNA Microarray Database and Project Management System at Medical University of South Carolina, Charleston, SC. This system is also integrated with microarray anlaysis system ArrayQuest. Both systems are web- based. Pubmed Reference for MUSC DNA Microarray Database(Argraves et al., 2003). (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed& list_uids=14668234&dopt=Abstract) Pubmed Reference for ArrayQuest. ArrayQuest is a web-accessible program for the analysis of DNA microarray data (Argraves et al., 2005) (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed& dopt=Abstract&list_uids=16321157&query_hl=1) URL for Microarray Database: http://proteogenomics.musc.edu/ma/musc_madb.php?page=home&act=manage URL for on-line DNA microarray anlaysis system: http://proteogenomics.musc.edu/arrayquest.html Saurin -- |------------------------------------------------ | Saurin D. Jani,MS | Statistical and Research Analyst | | Department of Cell Biology and Anatomy | Medical University of South Carolina (MUSC) | 173 Ashley Ave | Charleston,SC - 29407 | | Email: jani at musc.edu | Phone: (843)792-1340 | Website: http://www.musc.edu/~jani |------------------------------------------------ Quoting Thomas Litman <thl at="" exiqon.com="">: > I would like to setup a microarray management system and database for > spotted ararys. Is there any particular software (either public > domain or commercial) that you would recommend? > Thank you very much for your advice > > - Thomas Litman, Ph.D. > > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > >

Here we use BASE: http://base.thep.lu.se/ I didn't had any crash in 2 year. it works with MySQL so you can query it from R etc... You can store your data in and analyze them also. You have plugin available to install or develop your own. David On Feb 1, 2006, at 16:49, Thomas Litman wrote: > I would like to setup a microarray management system and database for > spotted ararys. Is there any particular software (either public domain > or commercial) that you would recommend? > Thank you very much for your advice > > - Thomas Litman, Ph.D. > > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor >