Hello, I am getting some errors using the affy library with porcine arrays: Error in getCdfInfo(object) : Could not obtain CDF environment, problems encountered: Specified environment specified did not contain Porcine Library - package porcinecdf not installed Data for package affy did not contain Porcine Bioconductor - porcinecdf not available In addition: Warning message: Failed to read replisting at http://www.bioconductor.org/repository/devel/package/Win32 in: getReplisting(repURL, repFile, method = method) I am using R version 2.0.1. How do I get the porcine CDF installed? -- David Carter London Regional Genomics Centre Robarts Research Institute, Room 4.01 PO Box 5015, 100 Perth Drive London, Ontario, Canada, N6A 5K8 phone: (519) 663-3253 fax: (519) 663-3037 dcarter at robarts.ca http://www.lrgc.ca

On Mar 30, 2006, at 3:21 PM, David Carter wrote: > Hello, > I am getting some errors using the affy library with porcine arrays: > Error in getCdfInfo(object) : Could not obtain CDF environment, > problems > encountered: > Specified environment specified did not contain Porcine > Library - package porcinecdf not installed > Data for package affy did not contain Porcine > Bioconductor - porcinecdf not available > In addition: Warning message: > Failed to read replisting at > http://www.bioconductor.org/repository/devel/package/Win32 in: > getReplisting(repURL, repFile, method = method) > > I am using R version 2.0.1. How do I get the porcine CDF installed? That is really old. You should update, espcially because newer version of affy/Bioconductor will not work with R this old. Anyway, try source("http://www.bioconductor.org/biocLite.R") biocLite("porcinecdf") /Kasper > > -- > David Carter > London Regional Genomics Centre > Robarts Research Institute, Room 4.01 > PO Box 5015, 100 Perth Drive > London, Ontario, Canada, N6A 5K8 > > phone: (519) 663-3253 > fax: (519) 663-3037 > > dcarter at robarts.ca > http://www.lrgc.ca > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/ > gmane.science.biology.informatics.conductor