Hi Does anyone who uses Bioconductor know if there are any new packages available that process SNP microarray data and determine copy number and Loss of heterozygosity? Thanks Natalie Twine

For copy number there's an elegant algorithm described in LaFramboise, et al., "Allele-Specific Amplification in Cancer Revealed by SNP Array Analysis", PLoS Computational Biology, 2005. Tom made an R package implementing it available on his web site, http://genome.dfci.harvard.edu/~tlaframb/PLASQ I don't know if he contributed it to BioC. -Ben > -----Original Message----- > From: bioconductor-bounces at stat.math.ethz.ch [mailto:bioconductor- > bounces at stat.math.ethz.ch] On Behalf Of Natalie Twine > Sent: Wednesday, March 29, 2006 10:54 AM > To: bioconductor at stat.math.ethz.ch > Subject: [BioC] SNP array packages > > Hi > > Does anyone who uses Bioconductor know if there are any new packages > available that process SNP microarray data and determine copy number > and Loss of heterozygosity? > > Thanks > Natalie Twine > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor