diffBind volcano plot error
0
0
Entering edit mode
rbronste ▴ 60
@rbronste-12189
Last seen 5.0 years ago

Hi I am getting the following error:

dba.plotVolcano(CR_count,th=0.1,fold=1,method = DBA_DESEQ2_BLOCK, bFlip = TRUE)
Error in `.rowNamesDF<-`(x, value = value) : invalid 'row.names' length

This happens only when I take a .csv sample file and make a secondary file with half of the conditions present in the original, however def enough to do comparisons with. Wondering if this is a bug? Thanks.

DiffBind volcano plot software error • 731 views
ADD COMMENT
1
Entering edit mode

If you subset a data.frame that contains a factor (and in so doing you remove one or more levels of the factor), the levels of the factor are not reset. If the levels of that factor are then used for something like generating the rownames of a data.frame, then you can have problems.

However, you have been around long enough to know that you need to provide a self-contained example of the problem and the output of sessionInfo, and without that it's at least as likely to be user error rather than a bug.

ADD REPLY

Login before adding your answer.

Traffic: 574 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6