Hi,
I would like to double check whether the the quasi-likelihood method, (glmQLFit and glmQLFTest), are correct to use when looking for genes which expression is affected by a selected polymorphism? I have a SNP of interest and run the glmQLFit which gave me nice logical results. However, the bioinformatician I talked to told me edgeR is not an appropriate tool for this sort of analysis. Is it so? And if the answer is yes- why not?
Thanks!
Thank you Gordon, my data definitely meets the criteria :)